Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1045 ATGAACTCCTCCACCAACACCTCGAATTCTCAGTCAATGGCTGCAGCAGCCAGTGATGGGTCTGGGAAGAAGGTAAGAAAACCTTACACCATAACCAAGTCCAGGGAGAGTTGGACTGAGGAAGAGCACGACAAGTTTCTCGAAGCTCTTCAACTATTTGACAGGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAGATTCGAAGCCATGCTCAGAAGTACTTCTTGAAAGTTCAAAAGAATGGGACAGTGGCACATGTGCCTCCTCCCCGTCCAAAGCGCAAAGCTGCTCATCCTTACCCACAAAAGGCATCAAAAAATGTTTTGGTGCCACTACCAGCTTCTGTTGGTTATGCTTCATCAAGAAATACGCTTGCACCTGGGTTTGCCTCATGGGATGAAACTTCCCTGCTGATGAATGCCGGAGCTGATAAACCCATGACCTGTCAGGATGAACTCAACAGTGTTCATCATGGAAATGAAGCTGATATTGGATCAAAGGGGATAACACAGATTACCAACAGCAGTCTCAGTGGTGTTGGAAATTCTACTAGAACACTACTGACTTCTGAGATACCAAAGCAAGGGAAACAAGCTCCAGTGCTTCATGGTTTGCCAGATTTTGCTGAAGTTTACGGTTTCATTGGAAGTGTATTTGATCCAGAAACAAATGACCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGCTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTCGAACCCATTAAGAAGGTATTGTCAACATACGATGTCAATACCATGGCAGTAGGAATTGATGTCAAGAAGCAGACAAATGATCTATCATGTCAAACCGCTTAA 888 0.4313 MNSSTNTSNSQSMAAAASDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPLPASVGYASSRNTLAPGFASWDETSLLMNAGADKPMTCQDELNSVHHGNEADIGSKGITQITNSSLSGVGNSTRTLLTSEIPKQGKQAPVLHGLPDFAEVYGFIGSVFDPETNDHVQKLKEMDPINFETVLLLMRNLTVNLSSPDFEPIKKVLSTYDVNTMAVGIDVKKQTNDLSCQTA* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1045 295 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 33 82 IPR006447 GO:0003677
Gso13g1045 295 Gene3D - 38 85 - -
Gso13g1045 295 SMART sant 34 82 IPR001005 -
Gso13g1045 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 84 IPR017930 -
Gso13g1045 295 CDD SANT 37 80 IPR001005 -
Gso13g1045 295 ProSiteProfiles SANT domain profile. 33 86 IPR017884 -
Gso13g1045 295 MobiDBLite consensus disorder prediction 1 37 - -
Gso13g1045 295 PANTHER SWI/SNF COMPLEX-RELATED 3 287 - -
Gso13g1045 295 Pfam Myb-like DNA-binding domain 35 80 IPR001005 -
Gso13g1045 295 PANTHER PROTEIN REVEILLE 8 3 287 - -
Gso13g1045 295 MobiDBLite consensus disorder prediction 1 17 - -
Gso13g1045 295 ProSiteProfiles Myb-like domain profile. 30 80 IPR001005 -
Gso13g1045 295 SUPERFAMILY Homeodomain-like 29 85 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1045 Gso-Chr13 24894424 24901035 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso13g1045 Myb_DNA-binding 4.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1045 - - gmx:100797466 565.459