Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1044 ATGCCGCCAAAGCAGCAATCAAAAGCTGATTTAGCGAAGAAGCAGAAGATTGTAGAGGACAAAACCTTCGGTCTCAAGAACAAGAACAAGAGTAAAAACGTCCAGAAGTATGTTCAGAATCTCAAGCAATCCGTGCAGCCAAGGCCCGATACCGCCAAAGTCGATGCCAAGAAAAAGAAGGAGGAGGAGAAGGCCAAGGAGAAGGAGCTAAATGATTTGTTCAAAATCGCTGTTACTCAACCCAAAGTGCCTGTTGGTGTTGATCCCAAGTCCATATTATGTGAGTTTTATAAAGTGGGGCAGTGTGCCAAGGGCTTCAAATGCAAGTTCTCGCATGATTTGAATGTTCAGAGGAAAGGGGAGAAGATTGACATTTACAGTGATAAGCGTGACCAGGAAACAATGGAGGATTGGGATCAAGAGACCTTGGAGAAGGTGGTGGAGTCAAAGAAAACTGAGTATAATCAGAATAAACCAACTGACATAGTCTGTAAATACTTTTTGGATGCAGTAGAAAAGAAGCAATATGGTTGGTTTTGGGTCTGCCCCAATGGTGGTAAGAATTGCCATTATAGACATGCTCTTCCACCTGGTTATGTTTTGAAATCTCAAATGAAGGCTTTGTTAGAGGAAGAAAGTGAAAAAATATCAATTGAAGAGGAGATTGAAAATCAGCGTGCCAAAGTGGCAACTACAACTCCTATGACTCCTGAGTTATTCTTTGAGTGGAAGAAGAAGAAGATAGAAGAGAGAGATGCCAATATAGCTGCACAACAGGCTGAGAGGGCTAAGAATGATCGCATGAGTGGTCGGGAGCTATTTTTGTCAAATGCTAGCTTGTTTGTGGATGATGCAGAAGCATATGACGTGTACCAGAGAGAACCAGAATCTTATGAAACTGAAGAGAATGGGAGTAGGAATGCTGCAGAAGATGGTCCCAGCTCCTCAGCAACAGCCGCTGCTGATGGTGATTATCTTGATGACATAGATGACGATGACGAGTTGGACATGGATGAGTTAGAAGAATTGGAAGCAAGCTTATCCAAGACATCAATCCTAATAAAGGAAACAGGAGCTGAAGCTTAA 1086 0.4254 MPPKQQSKADLAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQSVQPRPDTAKVDAKKKKEEEKAKEKELNDLFKIAVTQPKVPVGVDPKSILCEFYKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDQETMEDWDQETLEKVVESKKTEYNQNKPTDIVCKYFLDAVEKKQYGWFWVCPNGGKNCHYRHALPPGYVLKSQMKALLEEESEKISIEEEIENQRAKVATTTPMTPELFFEWKKKKIEERDANIAAQQAERAKNDRMSGRELFLSNASLFVDDAEAYDVYQREPESYETEENGSRNAAEDGPSSSATAAADGDYLDDIDDDDELDMDELEELEASLSKTSILIKETGAEA* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1044 361 Coils Coil 53 73 - -
Gso13g1044 361 Coils Coil 246 266 - -
Gso13g1044 361 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 360 - -
Gso13g1044 361 ProSiteProfiles Zinc finger C3H1-type profile. 158 196 IPR000571 GO:0046872
Gso13g1044 361 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21 1 360 - -
Gso13g1044 361 MobiDBLite consensus disorder prediction 294 333 - -
Gso13g1044 361 Pfam DRG Family Regulatory Proteins, Tma46 215 294 IPR032378 -
Gso13g1044 361 Gene3D - 87 200 - -
Gso13g1044 361 Gene3D - 202 279 - -
Gso13g1044 361 SMART c3hfinal6 158 195 IPR000571 GO:0046872
Gso13g1044 361 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Gso13g1044 361 SUPERFAMILY CCCH zinc finger 88 113 IPR036855 GO:0046872
Gso13g1044 361 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Gso13g1044 361 Coils Coil 208 228 - -
Gso13g1044 361 MobiDBLite consensus disorder prediction 40 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1044 Gso-Chr13 24869512 24873069 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso13g1044 DFRP_C 8.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1044 - - gmx:100778701 652.899