Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1041 ATGACAAGGGTTGTCCAGATGAGTGTTGATGGCGACGGCAAAGAGCTGAGAGAACTGAATCAGTGCTTACGAGACGGGAAGAAAATTGCTGGTGGGGAACGTGGTTTATACGAGGGCGATGAAGTGAAATGTAATGGAGTTGCTGAAGAAGTTAAGATTGGAAAGGGGGGGATTGTGGAGTCCTCCTCTGTCCAGCAGCATATACCACAGCCTCAAGGGGCAATAATTTGTTGGGAGAGGTTTTTGCATATTAGATCCCTTAAGGTCTTGCTTGTGGAGTATGATGACTCTACCCGTCATGTTGTCACTGCACTGCTTCGCAATTGTAGTTATGAAGTTATTGACGCAGCAAATGGATTGCAAGCTTGGAAGATATTGGAGGATTTAACCAATCATATTGATCTCATTTTAACTGAGGTGGCAATGCCTGGCTTATCAGGCATTGGTCTACTATACAAGATTATGGGCCACAAAACCCGGAAAAATATTCCAGTAGTTATGATGTCATCTCATGATTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCTGTTGACTTTCTAGTTAAACCCATACGGAAGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGAAGATGTCACAGTTCTAGTGGGAGTGGCAGTGAAAGTGGCACACAAACCCAGAAGTCTGTAAAATCAAAGAGTCTTGAGAAGTTTGATAATAATTCTGGAAGCAATGGCGAAGATGATAATGGAAGTATAGGACTGAATAATGGGGATGGAAGTGACAATGGTAGTGGCACTCAGAGCTCATGGACCAAACATGCTGTAGAAGTTGATAGTCCTAAACCAGTTTCCCACTGGGATAAAATAGCTGAGTGCCCTGACAGTACCTGTGCTCAAGTTGTTCACTCCAATGCTGAAATTGGTGAGAACAAGGTGGTTCCTCTAGCTGTGAAGGAGTGTCCAGAACAGAAGGAACAACTTGTCAAAACTGCAGGTTCTAAACATAGCAATGCACCTGATGTCGGCCCCTCTAAATTTAATGATCAAATTAATAGAGGACAACTGGATCTTAATTGTGAAAATCAATCTAGCAAGCTAAGGTGCAAAGGTTTATCACTGTCTGATGCCATTACTAGCACTTCTGATTCTCAGATGCATAGTGGAGGATTTGAAGCCTTGTATAAAAAACCCAAGTCCTCAGATATTGAAAATAAAGACACTAATAATGATGAAGAATTGCCATCTCTTGAGCTCAGTTTAAAGAGGCTTAGAGGAGTTGAAGATGCTGGTATTGCAATTCAGGATGACAGGAATGTTTTAAGACGTTCTGATCAGTCTGCTTTCTCAAGGTACAATGCAGCCTCAAACCCTAAGAAATCTCCCACTGGATGTGTTGGAAGCAATTCTCCTCATAATAATAGCTTAGAAGTTACAAAGAAAGATTCATCTCACGATATTCAATCTCATTCTAGCGGCAATCCTCCTAACCAAAACTCAAATGGTGCTAGCAATAACATTGATATGGGTTCCACTACTAATAATGCTTACGCTAAATCTGCAGTTATAAGTGAGCCAGCAGTAGCATCAACAACCAAATGTTTGTACCAAACATCTGCTTACCAGCCTGAAAAAAACAACCTTGTTTGTACCTCTCAACAAGTTGTCTTACACAATACTGAAGATACGATGGCAACAATGCTGGCACCACCTAAACTAGACAGACATAAAGATTCTGCAGCTCCAGACTTCCATCTCCATTGTGAAAACCATAACTGTATTGCTGACAACATGAAGCACCAGCTGCCACCTGATCATGATACTGAATCTATAAAGAAAATGGCCACTGCTGCTCCACATTGTGGATCATCAAATGCGGTTGAAGTGCTAGTTGAAGGTAATGTTGGAAACCACAGTATCAATAGAAGTGCCTCAGGCAGCAACAATGGAAGCAATGGACAAAATGGGAGCAGCACGGCGGTTAATGCTGGAGGGACAAACATGAAAAGCAACAATGGACTCACTGGGAATAGTGGCAGTGGTGATGCTAGCGGAAGTGTAAGTGCCAACAGAGTAGATCAAAACAAGACTTCTCAAAGGGAAGCGGCCTTAACTAAATTTCGCCAAAAGAGAAAAGAGAGAAGGGAGAGGTGCTTTCATAAAAAGGTTCGATATCAGAGCAGAAAGAGATTAGCTGAACAACGACCTCGATTTCGTGGACAATTTGTTCGACAGTCCTCTAACGAAAATGCAAGTGAGGCAACAACAGATAGCTGA 2268 0.4202 MTRVVQMSVDGDGKELRELNQCLRDGKKIAGGERGLYEGDEVKCNGVAEEVKIGKGGIVESSSVQQHIPQPQGAIICWERFLHIRSLKVLLVEYDDSTRHVVTALLRNCSYEVIDAANGLQAWKILEDLTNHIDLILTEVAMPGLSGIGLLYKIMGHKTRKNIPVVMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSLEKFDNNSGSNGEDDNGSIGLNNGDGSDNGSGTQSSWTKHAVEVDSPKPVSHWDKIAECPDSTCAQVVHSNAEIGENKVVPLAVKECPEQKEQLVKTAGSKHSNAPDVGPSKFNDQINRGQLDLNCENQSSKLRCKGLSLSDAITSTSDSQMHSGGFEALYKKPKSSDIENKDTNNDEELPSLELSLKRLRGVEDAGIAIQDDRNVLRRSDQSAFSRYNAASNPKKSPTGCVGSNSPHNNSLEVTKKDSSHDIQSHSSGNPPNQNSNGASNNIDMGSTTNNAYAKSAVISEPAVASTTKCLYQTSAYQPEKNNLVCTSQQVVLHNTEDTMATMLAPPKLDRHKDSAAPDFHLHCENHNCIADNMKHQLPPDHDTESIKKMATAAPHCGSSNAVEVLVEGNVGNHSINRSASGSNNGSNGQNGSSTAVNAGGTNMKSNNGLTGNSGSGDASGSVSANRVDQNKTSQREAALTKFRQKRKERRERCFHKKVRYQSRKRLAEQRPRFRGQFVRQSSNENASEATTDS* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1041 755 Pfam CCT motif 697 742 IPR010402 GO:0005515
Gso13g1041 755 MobiDBLite consensus disorder prediction 485 508 - -
Gso13g1041 755 MobiDBLite consensus disorder prediction 211 270 - -
Gso13g1041 755 Pfam Response regulator receiver domain 89 200 IPR001789 GO:0000160
Gso13g1041 755 CDD psREC_PRR 89 192 - -
Gso13g1041 755 MobiDBLite consensus disorder prediction 707 725 - -
Gso13g1041 755 MobiDBLite consensus disorder prediction 635 699 - -
Gso13g1041 755 ProSiteProfiles Response regulatory domain profile. 88 206 IPR001789 GO:0000160
Gso13g1041 755 PANTHER TWO-COMPONENT RESPONSE REGULATOR 32 731 IPR045279 GO:0009736
Gso13g1041 755 MobiDBLite consensus disorder prediction 737 755 - -
Gso13g1041 755 MobiDBLite consensus disorder prediction 448 474 - -
Gso13g1041 755 MobiDBLite consensus disorder prediction 448 508 - -
Gso13g1041 755 Gene3D - 86 241 - -
Gso13g1041 755 ProSiteProfiles CCT domain profile. 700 742 IPR010402 GO:0005515
Gso13g1041 755 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 32 731 - -
Gso13g1041 755 MobiDBLite consensus disorder prediction 635 755 - -
Gso13g1041 755 SMART REC_2 87 202 IPR001789 GO:0000160
Gso13g1041 755 SUPERFAMILY CheY-like 85 211 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1041 Gso-Chr13 24843032 24854167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1041 163 744 Response Regulator Gene Family AT5G02810 46.792 6.17e-116 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Gso13g1041 Response_reg 4.4e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1041 K12129 - gmx:100796933 1411.74