Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1040 ATGGGTTGGATTCCCTGTTCCGGAAGTTCAAACACTAAGAAGAAGTTAAAGAAGAAATTGGAGAAGATGGAAGGGCAGAGCAGCCTCGTTGATCCGATCAAAGCCACCCCAGGGAAATTAAAGAGGAATTCATCCATGAATTCCAAAAATGGGAACCCTGAGCACATTGCTGCACAGACATTCTCATTCCGTGAGTTGGCAACTGCAACTAGAAACTTCAGAGCCGAATGTCTTTTGGGTGAGGGAGGCTTTGGCAGAGTATACAAGGGGCGTTTGGAAAATATTAATCAGATTGTTGCAATTAAACAACTTGACCGAAATGGGCTACAAGGGAATAGAGAATTCCTTGTTGAAGTGCTGATGTTAAGTCTTCTTCACCACCCTAACCTTGTCAACCTGATTGGTTATTGTGCTGATGGGGATCAAAGACTTCTAGTTTATGAATTTATGTCATTAGGATCCTTGGAAGACCACTTACATGATATTTCTCCTGGCAAGAAACGACTTGACTGGAACACACGGATGAAAATAGCTGCTGGGGCTGCAAGAGGATTGGAATATTTGCATGACAAAGCTAATCCTCCTGTCATATACCGAGATTTAAAGTGCTCCAACATTTTGCTCGGTGAAGGATATCATCCAAAGTTATCTGATTTTGGTTTGGCTAAACTTGGTCCAGTGGGGGAAAACACCCATGTATCAACAAGGGTTATGGGCACCTATGGATATTGTGCTCCAGAGTATGCAATGACAGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGTGTTGTTCTTCTGGAAATAATTACTGGAAGGAAAGCAATTGACAATTCAAAAGCTGCAGGAGAGCAGAATCTTGTTGCATGGGCCAGACCCTTGTTCAAAGATCGAAGAAAATTTTCGCAAATGGCTGATCCAATGCTCCAAGGTCAATATCCTCCAAGAGGGCTATTCCAGGCCCTTGCTGTTGCAGCAATGTGTGTTCAGGAGCAGGCCAATATGCGTCCAGTTATAGCTGATGTTGTCACAGCTTTGAGTTACCTTGCTTCACAAAAATATGACCCGAATACTCAGACATTACAAAGCTCTCGCCTTGCTCCTGGTACTCCTCCAAGATCCAAGAGGGGATATAATAGTCTGGTGAAAATTTCAAACATCTTACAACACACTGCAAGTTATAGATTTGTAGATGTTAATACCAGTTGTCTTATGGTGGTGTTCTTTCTTCAGAGCATAGATGCTAAAAATGTTGTAAATTTTTGTTCTACCCTGGTGCACAGAACTGCTCCTATTTCCATTTGGAGCCAAGATAGTATATCCTCTTCCTTTTCTTAG 1341 0.4206 MGWIPCSGSSNTKKKLKKKLEKMEGQSSLVDPIKATPGKLKRNSSMNSKNGNPEHIAAQTFSFRELATATRNFRAECLLGEGGFGRVYKGRLENINQIVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMSLGSLEDHLHDISPGKKRLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKAAGEQNLVAWARPLFKDRRKFSQMADPMLQGQYPPRGLFQALAVAAMCVQEQANMRPVIADVVTALSYLASQKYDPNTQTLQSSRLAPGTPPRSKRGYNSLVKISNILQHTASYRFVDVNTSCLMVVFFLQSIDAKNVVNFCSTLVHRTAPISIWSQDSISSSFS* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1040 446 SMART serkin_6 73 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1040 446 Gene3D Transferase(Phosphotransferase) domain 1 150 368 - -
Gso13g1040 446 PANTHER OS07G0668900 PROTEIN 1 379 - -
Gso13g1040 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Gso13g1040 446 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Gso13g1040 446 ProSiteProfiles Protein kinase domain profile. 73 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1040 446 Gene3D Phosphorylase Kinase; domain 1 57 149 - -
Gso13g1040 446 SUPERFAMILY Protein kinase-like (PK-like) 47 347 IPR011009 -
Gso13g1040 446 CDD STKc_IRAK 79 347 - -
Gso13g1040 446 Pfam Protein tyrosine and serine/threonine kinase 77 344 IPR001245 GO:0004672|GO:0006468
Gso13g1040 446 Coils Coil 6 26 - -
Gso13g1040 446 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1040 Gso-Chr13 24823357 24827065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1040 13 352 Glycoside Hydrolase AT3G07070 65.130 2.47e-164 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gso13g1040 PK_Tyr_Ser-Thr 4.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1040 - - gmx:100776041 750.355