Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1034 ATGGAAGAAACAACATCAACCATCATCATGGCTGCACTCTCCACCCTCACACCTTCCCAATTCTCAGATCTCACTCGCTCCATTATCTCCGCCACCAACCACCACCATCGCCGCCTCTCCTCCCTCCTCTCCTCCCCAACGCTCTTCTCTTTAACCCTTCACCATCTCCACACTCTCACACTCCCCCAGAAGACCCTCCTCATCGCCCGCCACCTCCTCTCCTCCCTCCACCTCCTCACCGCCACGTCGCCGCCTCTGTCCACCACCACACGGCAGCGCGACCTCGACGCCGCGCTGCTCCTCCTTCTCCTCTGCGAAACGCACAACCACAACCCACATGCCCTCGAGGCACCGTTCTCCGAATGGAGAAAAAACTTGAGCAAAGTGTTCTCTGATTCGTTGTTAACTGTTTCTCTTGCACCCCTTGGGACGGTTATGATTCCCTTCGTTGAGACGGTGTCGCGGTGCTGGAGGCTTGTGGGTGCGCTGAATTGCGGCGGAGGGAAGGAGGCGGCTTCGGCGGCGATAATGGTGGCGCTGCCGTCGGTGGAGGTGAGGCACAGTGGGAGGGAGTGCGTGATATGCAAGGAGGAGATGGGAATAGGAAGGGACGTGTGCGAGTTGCCATGTCAACACTTGTTTCATTGGATGTGTATTTTGCCGTGGCTGGGGAAAAGGAACACGTGTCCTTGCTGCAGGTTTCGGTTGCCGTCCGATGATGTCTTCGGAGAGATCCAACGGCTGTGGGAAGTCTTGGTTAAAATGACTGCAAAAGATTCATAG 783 0.5658 MEETTSTIIMAALSTLTPSQFSDLTRSIISATNHHHRRLSSLLSSPTLFSLTLHHLHTLTLPQKTLLIARHLLSSLHLLTATSPPLSTTTRQRDLDAALLLLLLCETHNHNPHALEAPFSEWRKNLSKVFSDSLLTVSLAPLGTVMIPFVETVSRCWRLVGALNCGGGKEAASAAIMVALPSVEVRHSGRECVICKEEMGIGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRFRLPSDDVFGEIQRLWEVLVKMTAKDS* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1034 260 SUPERFAMILY RING/U-box 187 238 - -
Gso13g1034 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 239 IPR013083 -
Gso13g1034 260 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 4 257 - -
Gso13g1034 260 ProSiteProfiles Zinc finger RING-type profile. 192 233 IPR001841 -
Gso13g1034 260 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 4 257 - -
Gso13g1034 260 Pfam Ring finger domain 191 233 IPR001841 -
Gso13g1034 260 SMART ring_2 192 232 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1034 Gso-Chr13 24746928 24748575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1034 1 254 C3H Transcription Factor Family AT5G02750 50.000 6.32e-80 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1034 - - gmx:100818800 443.351