Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1025 ATGGGTAACTCCCATGGACACCGGCATCGCAAACACGGTAACTCCGTTCCTCCCAACACGGTTCCTCCTCCCTATAAATACAATCCTCACCCAACCACCTCCAATTCCACCATGCTTTCTCTTCCTTACACCCACGTCGACACCACCCTCCGCTCCCTCGCCGCCCAAGCCGAGGGCTTCGGTCGCTTCGCTATCGGCGGCCTCCACGGTCCCCTTCACCCCGTCACATCTCTCGCAGATGATGGACCGGGGTCACTGCGTGACGCGTGTCGCAGAAAAGAACCTTTGTGGATTGTGTTCGAAGTTTCCGGCACCATTCAACTCTCCTCGTACTTGAACGTGTCGTCTCACAAGACCATCGATGGTCGTGGCCAGAGGATCAAACTCAGCGGAAAAGGCTTGCGGCTGAAGGAATGCGAGCACGTGATAATTTGCAATCTGGAGTTCGAAGGAGGCAGAGGGCATGATGTTGATGCCATTCAGATCAAACCTAATTCCAAGCACATATGGATCGATCGTTGCACGCTCAGTGATTTTGATGATGGGCTCATAGATATCACCCGAGAAAGCACAGACATTACTATTTCAAGGTGCCACTTCTCTCAGCATGACAAAGCCATGCTCATTGGGGCTGATCCCACGCATGTTGGAGATAGGTGCATGAGGGTGACCATACACCATTGTTTTTTCAATGGGACTCGACAGAGGCAACCTCGTGTTAGGTTTGCAAAAGTGCATCTGTACAATAACTATATCAGAAACTGGGGCATATATGCTGTTTGTGCTAGTGTGGAATCCCAGATATTCTCGCAACATAATATCTATGAAGCAGGACAGAAGAAAGTGGCATTTAAGTACCTTACTGAGAAGGCAGCAGACAAGGAAGTGGGAGCAACTGGTACCATAAGGTCTGAAGGAGACATATTCTTAAATGGTGCTCAAAAAGGGTTAATGACTGAGGATGTTGGGTGCAACATGTTTCACCCCAGTGAACACTATCCCTCTTGGACAGTGGAAGCCCCTACAGACGATCTGAAACAGATTCTTCATCACTGCACTGGATGGCAATCTCTTGCTAAGCCAGCAGATCAAACACTATGA 1101 0.4941 MGNSHGHRHRKHGNSVPPNTVPPPYKYNPHPTTSNSTMLSLPYTHVDTTLRSLAAQAEGFGRFAIGGLHGPLHPVTSLADDGPGSLRDACRRKEPLWIVFEVSGTIQLSSYLNVSSHKTIDGRGQRIKLSGKGLRLKECEHVIICNLEFEGGRGHDVDAIQIKPNSKHIWIDRCTLSDFDDGLIDITRESTDITISRCHFSQHDKAMLIGADPTHVGDRCMRVTIHHCFFNGTRQRQPRVRFAKVHLYNNYIRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLTEKAADKEVGATGTIRSEGDIFLNGAQKGLMTEDVGCNMFHPSEHYPSWTVEAPTDDLKQILHHCTGWQSLAKPADQTL* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1025 366 PANTHER PECTATE LYASE 35 360 - -
Gso13g1025 366 SMART amb_all 83 281 IPR002022 -
Gso13g1025 366 Gene3D - 43 350 IPR012334 -
Gso13g1025 366 PRINTS Pollen allergen Amb family signature 56 73 IPR018082 -
Gso13g1025 366 PRINTS Pollen allergen Amb family signature 236 255 IPR018082 -
Gso13g1025 366 PRINTS Pollen allergen Amb family signature 258 277 IPR018082 -
Gso13g1025 366 PANTHER PECTATE LYASE 18-RELATED 35 360 IPR045032 GO:0030570
Gso13g1025 366 MobiDBLite consensus disorder prediction 1 39 - -
Gso13g1025 366 Pfam Pectate lyase 111 274 IPR002022 -
Gso13g1025 366 SUPERFAMILY Pectin lyase-like 56 358 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1025 Gso-Chr13 24643760 24646754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1025 78 363 Polysaccharide Lyase AT3G55140 76.224 1.27e-170 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1025 K01728 - gmx:100814368 770