Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1016 ATGGTAGCCATTCTGAAGAGACAAAGAGAAACCGAAGCCGAGGAGAGCATCATAAGACTGGCAGAAAGTCTCATGCAACTGTCGCGAGTCCAACAAAAAAGCAAGCCTCTTCTCAAAACCTTTTCTCCAACGGAGTTCGAGTGCAAAACCTGTAACCGCAAGTTTCCATCTTTTCAAGCCCTTGGTGGTCACAGGGCGAGCCACAAGAAGCCCAAGTTCGAAGGTGAAGAACTCAAAGAGGAGGCCAAGAAGGGTCTGAGTTTGGGGAACAAACCCAAAATGCACGAGTGTTCCATTTGCGGCATGGAATTCTCTCTGGGTCAGGCACTGGGGGGTCACATGAGAAAACACAGGGGTGCCACCAGTGAGAATAATAACGAAGCGTTTTCTTCTTCTATAAAGCAAGCAATTTCAAAAGTTCCAGTTTTGAAACGATCGAATAGCAAGAGGGTCATGTGCTTGGAGATGGACCTGAATTTAACGCCTTTGGAAAATGACTTGAAGTTGTTGTTCGGAAACAAGGCTCCTAGAGTCGATCTTTCTTTGTAG 549 0.4627 MVAILKRQRETEAEESIIRLAESLMQLSRVQQKSKPLLKTFSPTEFECKTCNRKFPSFQALGGHRASHKKPKFEGEELKEEAKKGLSLGNKPKMHECSICGMEFSLGQALGGHMRKHRGATSENNNEAFSSSIKQAISKVPVLKRSNSKRVMCLEMDLNLTPLENDLKLLFGNKAPRVDLSL* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1016 182 Gene3D Classic Zinc Finger 43 117 - -
Gso13g1016 182 SUPERFAMILY beta-beta-alpha zinc fingers 46 117 IPR036236 -
Gso13g1016 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Gso13g1016 182 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 5 177 - -
Gso13g1016 182 PANTHER ZINC FINGER PROTEIN ZAT5 5 177 - -
Gso13g1016 182 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Gso13g1016 182 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Gso13g1016 182 SMART c2h2final6 95 117 IPR013087 -
Gso13g1016 182 SMART c2h2final6 46 68 IPR013087 -
Gso13g1016 182 Pfam C2H2-type zinc finger 46 71 - -
Gso13g1016 182 Pfam C2H2-type zinc finger 95 119 - -
Gso13g1016 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1016 Gso-Chr13 24536371 24537277 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1016 5 180 C2H2 Transcription Factor Family AT3G53600 47.594 2.91e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso13g1016 zf-C2H2_6 5.9e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1016 - - gmx:100526874 339.732