Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1015 ATGAAGAGACAGAGAGAGAACGAAGTAACAACGTTGGAAAGCTGGGACATGCAAATTTGTTCAACTTCAATCACACCCGACACAAGTGTTTCCAGTTCCACCATATCTCCTGAAGATGTATTTGAGTGCAAAACGTGCAACCGCAAGTTCAACTCTTTTCAAGCGCTGGGTGGCCATAGGGCTTGTCACAACAAGAGGGTGAAGATGGAAGGTGAAGAACAACAACTCAAAACAAGGGCAAAATATCTGGGTTTGGGAAAACACAGTGAGCCCAAAATGCATAATTGCTCCATTTGTGGTCAAGGTTTCTCTCTGGGCCAGGCCTTGGGAGGACACATGAGAAGACACAGAGCTTCGACCAACGATGTTTTCTCTTCCATAAACCAGGTTGTTGCAAAAGTTTCGGTTTTAAAAAGATCGTGTAATGACAAGGTTTTCTACTTGGACCTCAACTTAACTCCCCTCGAGAATGACTTGAAATTGTTGTTGTTCGGGAAATTGTCACCCAAAGTTAATCTTTCTTCCTTCTGA 531 0.4331 MKRQRENEVTTLESWDMQICSTSITPDTSVSSSTISPEDVFECKTCNRKFNSFQALGGHRACHNKRVKMEGEEQQLKTRAKYLGLGKHSEPKMHNCSICGQGFSLGQALGGHMRRHRASTNDVFSSINQVVAKVSVLKRSCNDKVFYLDLNLTPLENDLKLLLFGKLSPKVNLSSF* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1015 176 Gene3D Classic Zinc Finger 71 144 - -
Gso13g1015 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Gso13g1015 176 Pfam C2H2-type zinc finger 40 65 - -
Gso13g1015 176 Pfam C2H2-type zinc finger 94 118 - -
Gso13g1015 176 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Gso13g1015 176 SMART c2h2final6 94 116 IPR013087 -
Gso13g1015 176 SMART c2h2final6 41 63 IPR013087 -
Gso13g1015 176 SUPERFAMILY beta-beta-alpha zinc fingers 40 116 IPR036236 -
Gso13g1015 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Gso13g1015 176 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 30 171 - -
Gso13g1015 176 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Gso13g1015 176 Gene3D Classic Zinc Finger 37 64 - -
Gso13g1015 176 PANTHER ZINC FINGER PROTEIN ZAT5 30 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1015 Gso-Chr13 24533926 24534717 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1015 1 173 C2H2 Transcription Factor Family AT3G53600 45.055 3.26e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso13g1015 zf-C2H2_6 5e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1015 - - gmx:100793782 360.147