Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso13g1015 | ATGAAGAGACAGAGAGAGAACGAAGTAACAACGTTGGAAAGCTGGGACATGCAAATTTGTTCAACTTCAATCACACCCGACACAAGTGTTTCCAGTTCCACCATATCTCCTGAAGATGTATTTGAGTGCAAAACGTGCAACCGCAAGTTCAACTCTTTTCAAGCGCTGGGTGGCCATAGGGCTTGTCACAACAAGAGGGTGAAGATGGAAGGTGAAGAACAACAACTCAAAACAAGGGCAAAATATCTGGGTTTGGGAAAACACAGTGAGCCCAAAATGCATAATTGCTCCATTTGTGGTCAAGGTTTCTCTCTGGGCCAGGCCTTGGGAGGACACATGAGAAGACACAGAGCTTCGACCAACGATGTTTTCTCTTCCATAAACCAGGTTGTTGCAAAAGTTTCGGTTTTAAAAAGATCGTGTAATGACAAGGTTTTCTACTTGGACCTCAACTTAACTCCCCTCGAGAATGACTTGAAATTGTTGTTGTTCGGGAAATTGTCACCCAAAGTTAATCTTTCTTCCTTCTGA | 531 | 0.4331 | MKRQRENEVTTLESWDMQICSTSITPDTSVSSSTISPEDVFECKTCNRKFNSFQALGGHRACHNKRVKMEGEEQQLKTRAKYLGLGKHSEPKMHNCSICGQGFSLGQALGGHMRRHRASTNDVFSSINQVVAKVSVLKRSCNDKVFYLDLNLTPLENDLKLLLFGKLSPKVNLSSF* | 177 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso13g1015 | 176 | Gene3D | Classic Zinc Finger | 71 | 144 | - | - | |
Gso13g1015 | 176 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 41 | 68 | IPR013087 | - | |
Gso13g1015 | 176 | Pfam | C2H2-type zinc finger | 40 | 65 | - | - | |
Gso13g1015 | 176 | Pfam | C2H2-type zinc finger | 94 | 118 | - | - | |
Gso13g1015 | 176 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 96 | 116 | IPR013087 | - | |
Gso13g1015 | 176 | SMART | c2h2final6 | 94 | 116 | IPR013087 | - | |
Gso13g1015 | 176 | SMART | c2h2final6 | 41 | 63 | IPR013087 | - | |
Gso13g1015 | 176 | SUPERFAMILY | beta-beta-alpha zinc fingers | 40 | 116 | IPR036236 | - | |
Gso13g1015 | 176 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 94 | 121 | IPR013087 | - | |
Gso13g1015 | 176 | PANTHER | AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED | 30 | 171 | - | - | |
Gso13g1015 | 176 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 43 | 63 | IPR013087 | - | |
Gso13g1015 | 176 | Gene3D | Classic Zinc Finger | 37 | 64 | - | - | |
Gso13g1015 | 176 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 30 | 171 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso13g1015 | Gso-Chr13 | 24533926 | 24534717 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso13g1015 | 1 | 173 | C2H2 Transcription Factor Family | AT3G53600 | 45.055 | 3.26e-38 | 127 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Gso13g1015 | zf-C2H2_6 | 5e-09 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso13g1015 | - | - | gmx:100793782 | 360.147 |