Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1014 ATGAAGAGACAGAGAGATGGAGAAGAGAACATAGATTTGGGAAATTGTCTACTGTTGCTCTCTCATCCCAGAGAAATCAAACCCCAAAAACTTTTGGGCCCTAAAGAATTTGAGTGTATGACATGCAACCGCAAATTTTCTTCATTTCAGGCCCTCGGTGGCCACAGGGCCAGCCACAAAAAGCCCAAACTATACGTGAAAGAACAGTGTAAAATTCTGATGTTGAGGAATAAGCCCAAAAAACACGAGTGCTCCATTTGTGGTAGGGAATTCACTTTGGGCCAGGCACTGGGTGGACACATGAAAAAGCACAGAATTGCCGTTGACCAAGGGCTTTCTTCAATAAACAAGGTTGTTGTAAAAGTACCGGTTCTTAAAAGGTCGAATAGTAAGAGGGTTTTGTGCTTGGACTTGAACTTGACTCCTCTGCAGAATGACTTGAAGTTATTGTTTGGAGACAAGGCACCCAAAGTTGATTCCTTCGTCTGA 489 0.4315 MKRQRDGEENIDLGNCLLLLSHPREIKPQKLLGPKEFECMTCNRKFSSFQALGGHRASHKKPKLYVKEQCKILMLRNKPKKHECSICGREFTLGQALGGHMKKHRIAVDQGLSSINKVVVKVPVLKRSNSKRVLCLDLNLTPLQNDLKLLFGDKAPKVDSFV* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1014 162 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Gso13g1014 162 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Gso13g1014 162 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Gso13g1014 162 SUPERFAMILY beta-beta-alpha zinc fingers 35 104 IPR036236 -
Gso13g1014 162 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 157 - -
Gso13g1014 162 PANTHER ZINC FINGER PROTEIN ZAT5 1 157 - -
Gso13g1014 162 Pfam C2H2-type zinc finger 37 62 - -
Gso13g1014 162 Pfam C2H2-type zinc finger 82 106 - -
Gso13g1014 162 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 104 IPR013087 -
Gso13g1014 162 Gene3D Classic Zinc Finger 35 104 - -
Gso13g1014 162 SMART c2h2final6 82 104 IPR013087 -
Gso13g1014 162 SMART c2h2final6 37 59 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1014 Gso-Chr13 24529688 24530463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1014 1 159 C2H2 Transcription Factor Family AT2G37430 51.724 2.84e-47 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso13g1014 zf-C2H2_6 3.9e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1014 - - gmx:100793243 322.398