Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1006 ATGGGAGAAGAAGTGGTTTGTGTGCATGCATTAGAAGAAGGAAAGCAGGAGAACAATGAGGAGTCAAGGACGGAACTGAAGCGTGACTACGACCAATGCGTTGCTGATACTGAACCTCACCTGTCTCCTAATAAGAAACAAGCGAAAGAAGTTTCCAATGATGAAGTGCGCTCTGAGGTTTCTAACCCCAACGTTTCTGCAGCAGAGCTTGCGCAAACTTTTCAAGATATCAGTAGCCAACCAACTGAATCCGAAAATGTCAACCATGCAGAGTGTGGGGAACTGACGTCTACTTGTTTGGAGAATTCAAGTTCTGATGAGACCTTGAGTGATGAAGCCGGTGAACAGAATAATAATAATAATAATAATACTTCTCAGAGTGATAAGGACACAAGTAGTGCTGCAATGACATCCTGTGTAGTGATGGAAATCCCCAAGCATGCGAGTTCATCTGGTATCAGGAAAATTACTTTTAAGTTCAGTAAGAAGAAGGAGGACTATGATTACCAACTGCCTCCACCTATGCACCATCCTGCTCTTTACAATGATGGCAATTACATTGGCTTTCATGGGGATGATGAAGAATATTTGGCAAGGGATGATTGTAGTGGTGGGTCGTTAGAAAGCCCGTGTGGAATGGGATATGTTCGTGATGGAGATTTGGACTTGTACACTCGCAATATGGAATTGAAAATGTCCAAGAAAGTAGTCCCCAACTGCTACCCTACAAATGTCAAAAAGCTTTTATCAACTGGCATCCTTGACGGAGCTGTAGTGAAGTATATTTACAATCCTGGAAAGGTTGAGCTACAGGGGATTATTGATGGTGGCGGATATTTGTGTGGCTGTTCAATGTGCAATTACTCTAGAGTTCTTAGTGCCTATGAGTTCGAGCAGCATGCTGGGGCCAAGACTAGACATCCAAATAATCATATATTCTTAGAAAATGGAAGACCGATATATAGTATTATACAGGAAATAAAAACTGCTCCACTCAGTCTACTAGATGAGGTTATAAAGAATGTGGCTGGTTCATCTGTCAATGAGGAGTCCTTCCAGGCTTGGAAAGAAAGTCTTCTACAAAGCAATGGCAAGGTTCAGGCTCATAAAAGTTATAGCACCAAACTTGTCGGTATGCCTCATACAAACATAAGTCAATCTGTAGAAAGTACAAGCCATTTGTCATCTTTGCATGTACCGAGTCATTATGAGCAGCACATGTATATGAATCAGACAACTGATGAATGGAAGCGTGTGGTGAAAAAGCCAAGCTCCTACACTTCTAACTCAGGTGTACTGCAGAAAAGAAGTGCTGATGGTTGCACTAAGAGAAGGGACAATGATTTACACAGGTTGCTTTTTATGCCAAATGGGCTACCAGATGGTGCTGAGTTGGCTTACTATGTCAAAGGACAGAAATTACTTGGAGGTTACAAACAGGGAAACGGGATAGTCTGTGGTTGTTGTGATATAGAGATAAGCCCTTCACAGTTTGAAGCCCATGCTGGAATGGCTGCTAGGCGTCAACCTTACCGACACATATATACTTCCAATGGATTAACACTTCATGACATAGCTCTATCGTTGGCAAATGGTCAAAACCTTACCACGGGAGACAGTGATGATATGTGTGCAGTATGTGGAGATGGAGGAGATTTGATTCTTTGCAATGGATGCCCCAGGGCATTTCATGCAGCCTGCTTGGGTTTACAGTGTGTTCCAGATAGTGGTTGGCAATGTCTAAATTGTATAGATAATGCTGGTAATGGAAGAGAATCTTCTATTGTGAGGCCAATCATGATACGATTGACACGCGTTGATAAAACACCAGAAGTTGAAATGGGAGGATGTGTTGTTTGCAGGGAACATGATTTCAGTGTTGCTAAATTTGATGAACGAACAGTAATAATTTGTGACCAGTGTGAGAAGGAGTATCATGTTGGCTGCTTGCGGGACATGGGGCTATGTGAGTTGGAAGAGCTGCCCAAGGATAAGTGGTTTTGTTGTGATGACTGCAATCGAATATATGCTGCTCTACAGAATTCAGTTTCTGCTGGAGCAGAAATTATACCAGCTTCCTTTTCAGAACTAATAATCAGGAAGCATGAGGACAAGGGATTATGTACCTATGGGGCCATGAATGATATCCAGTGGAGAATTTTAAGTGGAAAAAGTCGTTATCCTGAACATTTACCATTGCTTTCACGAGCTGCTGCAATTTTCCGAGAATGTTTTGATCCCATAGTTGCCATTTCTGGTCGTGATCTGATTCCTGTTATGGTCTACGGGAGAAATATTTCTGGCCAAGAGTTTGGGGGAATGTATTGCATTGTTTTAATTGTGAATTATGTTGTAGTATCTGCTGGGCTTCTTAGGATTTTTGGCCGTAATGTTGCTGAGCTTCCACTTGTTGCCACAAGCAGAGCACATCAAGGAAAAGGTTATTTTCAAGTGTTGTTCTCTTGCATAGAGAGGTTGCTGTCTTCTCTAAACGTGGAAAAGTTGGTGCTTCCTGCAGCCGGGGATGCTGAGTCAATTTGGACTAAGAAATTGGGCTTCCGAAAGATGAGTGAAGATCAGTTATCCAAACATCTCAGAGAGGTGCAGCTAACACTCTTCAATAAAACTTCAATGCTGGAGAAGACAGTGCAGCTGGCTATAGAATGA 2667 0.4218 MGEEVVCVHALEEGKQENNEESRTELKRDYDQCVADTEPHLSPNKKQAKEVSNDEVRSEVSNPNVSAAELAQTFQDISSQPTESENVNHAECGELTSTCLENSSSDETLSDEAGEQNNNNNNNTSQSDKDTSSAAMTSCVVMEIPKHASSSGIRKITFKFSKKKEDYDYQLPPPMHHPALYNDGNYIGFHGDDEEYLARDDCSGGSLESPCGMGYVRDGDLDLYTRNMELKMSKKVVPNCYPTNVKKLLSTGILDGAVVKYIYNPGKVELQGIIDGGGYLCGCSMCNYSRVLSAYEFEQHAGAKTRHPNNHIFLENGRPIYSIIQEIKTAPLSLLDEVIKNVAGSSVNEESFQAWKESLLQSNGKVQAHKSYSTKLVGMPHTNISQSVESTSHLSSLHVPSHYEQHMYMNQTTDEWKRVVKKPSSYTSNSGVLQKRSADGCTKRRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCGCCDIEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAVCGDGGDLILCNGCPRAFHAACLGLQCVPDSGWQCLNCIDNAGNGRESSIVRPIMIRLTRVDKTPEVEMGGCVVCREHDFSVAKFDERTVIICDQCEKEYHVGCLRDMGLCELEELPKDKWFCCDDCNRIYAALQNSVSAGAEIIPASFSELIIRKHEDKGLCTYGAMNDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNYVVVSAGLLRIFGRNVAELPLVATSRAHQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFRKMSEDQLSKHLREVQLTLFNKTSMLEKTVQLAIE* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1006 888 ProSiteProfiles Zinc finger PHD-type profile. 541 586 IPR019787 -
Gso13g1006 888 MobiDBLite consensus disorder prediction 1 35 - -
Gso13g1006 888 PANTHER AUTOIMMUNE REGULATOR 2 884 - -
Gso13g1006 888 SMART PHD_3 616 673 IPR001965 -
Gso13g1006 888 SMART PHD_3 543 584 IPR001965 -
Gso13g1006 888 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 767 859 IPR016181 -
Gso13g1006 888 MobiDBLite consensus disorder prediction 57 71 - -
Gso13g1006 888 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 675 IPR013083 -
Gso13g1006 888 Gene3D - 764 871 - -
Gso13g1006 888 SUPERFAMILY FYVE/PHD zinc finger 539 586 IPR011011 -
Gso13g1006 888 MobiDBLite consensus disorder prediction 100 134 - -
Gso13g1006 888 SUPERFAMILY FYVE/PHD zinc finger 613 669 IPR011011 -
Gso13g1006 888 CDD PHD1_AIRE 543 583 - -
Gso13g1006 888 ProSitePatterns Zinc finger PHD-type signature. 617 672 IPR019786 -
Gso13g1006 888 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 531 612 IPR013083 -
Gso13g1006 888 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 2 884 - -
Gso13g1006 888 Pfam Tify domain binding domain 477 526 IPR032308 -
Gso13g1006 888 Pfam Tify domain binding domain 272 326 IPR032308 -
Gso13g1006 888 MobiDBLite consensus disorder prediction 42 56 - -
Gso13g1006 888 MobiDBLite consensus disorder prediction 1 71 - -
Gso13g1006 888 ProSitePatterns Zinc finger PHD-type signature. 544 583 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1006 Gso-Chr13 24439013 24448747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1006 1 883 PHD Transcription Factor Family AT3G53680 52.503 0.0 891
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1006 - - gmx:100808999 1775.37