Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1002 ATGGCGGCGGCGTCGCGGAGGCTCCGGGACCTGCAGTCCGAGGCCGGGAACAAGATCTGCGTTGACTGCTCCCAGAAGAACCCGCAGTGGGCCTCCGTCTCCTACGGCGTCTTCATGTGCCTCGAGTGCTCCGGCAAGCACCGTGGCCTCGGCGTCCACATCTCCTTCGTCCGATCGGTCACCATGGACTCCTGGTCCGACATCCAGATCAAGAAAATGGAAGCCGGCGGCAACGACAAGCTCAACGCATTCCTCGCACAGTACTCCATCCCCAAAGAAACCGACATCGTTACGAAGTACAACACCAACGCCGCTTCTGTTTACCGCGACCGGATCCAGGCCATCGCCGAGGGCCGCCCCTGGCGCGATCCGCCGGTGTTGAAGGAAAACCTCTCCGCCGCCGGAAAGGGGAAGCCGCCGCTGACGCAAACGCGGAGGAATAATAATGAAGGTGGATGGGATGATTGGGGTAACGAGGCGAGTCCCCGGAGCAAGAGCAAGTCGACCGGGGATTTTAGGAATTTGAACGGCGGCGGCGGAGCGCCGGCGAGGTCGAGGTCGACGGAGGATATCTACACGCGGACGCAGCTGGAGGCGTCGGCTGCGAAAAAGGAGGACTTCTTCGCGAGGAAGATTGCGGAGAACGAGTCGCGGCCGGAGGGGCTGCCGCCCTCTCAGGGAGGGAAGTATGTCGGGTTTGGATCCAGTCCTCAGCCGCCTCAGCGGCGGAATGAAGCGCAAAACGATTACTTCTCTGTTGTTTCGCAGGGGATTGGTAAGTTGTCTTTGGTTGCTGCCTCTGCGGCTAATGTTGTTCAGGCTGGCACGAAGGAGTTCACTTCTAAGGTTAAGGAAGGTGGTTACGATCATAAGGTGAATGAAACTGTCAATGTTGTCACTCAAAAGACATCAGAGATTGGACAAAGGACTTGGGGCATAATGAAAGGAGTCATGGCCATGGCTTCCCAGAAGATTGAGGAGTACACTAAAGATGATCCAAACTGGAAGAATGATAACTGGCAACGAAATGAGAATGATAGAAATGGTTATTATCAGGATTTTAATCAAGAGAACAAAGGCTGGAATTCTTCTATTGGAAGAGAACAATCTTCATCAGGGCAATTTAAAACTCAAAGCTCTAGCTCTTGGGATGATTGGGACCACAACGATAGCAGGAAGGAAGAACCAGCTAAAGGATCAAGTCATTCATCAGGTGGGCTCTTTAGTACCCACAACTCAAGCTCTTGGGATGATTGGGAACACAGAGATTCTAGGAAGGAAGAACCAGCTAAAGGATCAGCTCCCCATAATAACGAGGATTGGGCTGGCTGGGATAATGCCAAAGATGATGGATTCGATAATTTTTATGAAGGTGCATCTAATAAGAAAGGTGTTGGTCATAATGGGAAATCAGATGGCACTTGGACAGAGGGAGGCTTTCTCTAA 1446 0.527 MAAASRRLRDLQSEAGNKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSDIQIKKMEAGGNDKLNAFLAQYSIPKETDIVTKYNTNAASVYRDRIQAIAEGRPWRDPPVLKENLSAAGKGKPPLTQTRRNNNEGGWDDWGNEASPRSKSKSTGDFRNLNGGGGAPARSRSTEDIYTRTQLEASAAKKEDFFARKIAENESRPEGLPPSQGGKYVGFGSSPQPPQRRNEAQNDYFSVVSQGIGKLSLVAASAANVVQAGTKEFTSKVKEGGYDHKVNETVNVVTQKTSEIGQRTWGIMKGVMAMASQKIEEYTKDDPNWKNDNWQRNENDRNGYYQDFNQENKGWNSSIGREQSSSGQFKTQSSSSWDDWDHNDSRKEEPAKGSSHSSGGLFSTHNSSSWDDWEHRDSRKEEPAKGSAPHNNEDWAGWDNAKDDGFDNFYEGASNKKGVGHNGKSDGTWTEGGFL* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1002 481 MobiDBLite consensus disorder prediction 415 434 - -
Gso13g1002 481 Gene3D Arf GTPase activating protein 1 127 IPR038508 -
Gso13g1002 481 PRINTS HIV Rev interacting protein signature 17 36 IPR001164 GO:0005096
Gso13g1002 481 PRINTS HIV Rev interacting protein signature 36 53 IPR001164 GO:0005096
Gso13g1002 481 PRINTS HIV Rev interacting protein signature 57 78 IPR001164 GO:0005096
Gso13g1002 481 SUPERFAMILY ArfGap/RecO-like zinc finger 6 113 IPR037278 -
Gso13g1002 481 CDD ArfGap_ArfGap1 4 118 - -
Gso13g1002 481 ProSiteProfiles ARF GTPase-activating proteins domain profile. 5 121 IPR001164 GO:0005096
Gso13g1002 481 Pfam Putative GTPase activating protein for Arf 6 104 IPR001164 GO:0005096
Gso13g1002 481 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 402 481 - -
Gso13g1002 481 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 402 - -
Gso13g1002 481 MobiDBLite consensus disorder prediction 442 456 - -
Gso13g1002 481 MobiDBLite consensus disorder prediction 213 245 - -
Gso13g1002 481 MobiDBLite consensus disorder prediction 119 190 - -
Gso13g1002 481 MobiDBLite consensus disorder prediction 344 382 - -
Gso13g1002 481 MobiDBLite consensus disorder prediction 329 343 - -
Gso13g1002 481 MobiDBLite consensus disorder prediction 383 399 - -
Gso13g1002 481 MobiDBLite consensus disorder prediction 329 481 - -
Gso13g1002 481 SMART arf_gap_3 2 121 IPR001164 GO:0005096
Gso13g1002 481 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 402 IPR044519 GO:0005096|GO:0016192
Gso13g1002 481 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 402 481 IPR044519 GO:0005096|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1002 Gso-Chr13 24402159 24406824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1002 6 92 C2H2 Transcription Factor Family AT4G21160 48.864 2.64e-22 95.9