Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1000 ATGGCTGATTCCACTCCGACTGCAACTCCTTCAAACGACATCGTATCAAGCTCTTTCCGACGAACGTTCTTTTCATTTCCGAAGGTCACCTTATACGATTGGTGGTTGGTTATAGCCAAAAACGACTTCCAAGGAAAGCGTTTAGCCGTCGCTGGCGTCTCGTCGAGAAAGGATGAGGCAACGCGTGTGTTTGTTTCTGCTGCTGTTATCAAAAGATATGACGTGTTTTCTCTCGAGACTGCGGATGGGATATGCGTCATAATCAGGGGCTTCATCAACGAGCAGCGCACTCTCGAAAATGGTTTTTCCGCCGAGGTTTTCCACCATTTTTTATTTGGCTTTCCTCCAGACTGGGAAAGGTATGCTCTAGATTGCTTCAAAGAAGAACCTACCACTGATGCTGATTTGGGTAGTGTTGTTCCTGATAATGCACCAGCTAGCTGTCCAAAAATTTTATCTGATGGTGTGGAAAAATCTATTCCTACCTGTTTGGTATCACCAGAGGAGGCCTCAGGAGATCACGAAATGTCATTCCCCGAAAATGAATGCAACGTGTCAAAGGAGATGGGTGGGGTTCATGTTGCTTGTAGTAGTGGTGGGAAAAGCCATAGTTTCAAGTTGCACAATATTAAAGTATGCCAGCAGAAGAAGCAGCCTGCTTCTGAATGTCTTCCGAACCATCCAGATAATGAGAACTCTAGTTCAGTGGCCTTGGAGAATTGTAATGTAGAGAGACTGGAAAGTCCGACAACACCCATTCAGCCGCAATTGTGGAGTGAATATTCAAACGATGCTTGTGTGGAAAATGCCATTCCTACTTCTTTGGCATCAGAGGAGGCCCCGGGAGATCATGAGAAGTCATTCCCTGAAAATGAATCCAACGTGTCAAAGGAAATTAATGGGGTTAATGTTGCTTGTAGTAGTGGTGGGAAAAGTCGTAGTGCCAGGTTGCATGATATTAAAGTATACCAGCAGAAGAAGCCTGCTTCTGGAGGGTCTCTGAAGCATCCAAATAATGAGAACTCTACTTCAGTGGCCTTGGAGAATTGTGATGTAAAGGGACTGAAAAGTCCAGCAACACCCATTCAGTCACAATCGTCAAGACAACTAAGCACATCACCTGGGCAGGTAATTAAAAAATCTGCATCCAAAATTTCTAGAACATTGTCACCAAAGACTGAAGGCTGTTATAAGAAAAAGAGAGTGACAGTTGAAACAAAAGTGGTCATGCCCAAGGGAAAACTGAATAAATCTGCATCTGCTTTGAAAAATCCACGAGAAAAGGATCTAAGCCCCTTGGCCAAGGGAAGCCAACAGAAAATATCCACATTTACTCCAGAGTCACTAAGTTTCAGAAAATCCAGATCCGGTAGGTTGCTTCTACCTCCCTTAGAGTTTTGGCGCAATCAAATACCAATTTATAATGCGGACCACGAGATTACAGAAATTCGGGATGGTGCATCTCTGATATCACCTTGTAGAGGTTTTTCACCATCATTGAGTAGGTTTAGCAATCAAAAACGTGGAGCGTGA 1533 0.4384 MADSTPTATPSNDIVSSSFRRTFFSFPKVTLYDWWLVIAKNDFQGKRLAVAGVSSRKDEATRVFVSAAVIKRYDVFSLETADGICVIIRGFINEQRTLENGFSAEVFHHFLFGFPPDWERYALDCFKEEPTTDADLGSVVPDNAPASCPKILSDGVEKSIPTCLVSPEEASGDHEMSFPENECNVSKEMGGVHVACSSGGKSHSFKLHNIKVCQQKKQPASECLPNHPDNENSSSVALENCNVERLESPTTPIQPQLWSEYSNDACVENAIPTSLASEEAPGDHEKSFPENESNVSKEINGVNVACSSGGKSRSARLHDIKVYQQKKPASGGSLKHPNNENSTSVALENCDVKGLKSPATPIQSQSSRQLSTSPGQVIKKSASKISRTLSPKTEGCYKKKRVTVETKVVMPKGKLNKSASALKNPREKDLSPLAKGSQQKISTFTPESLSFRKSRSGRLLLPPLEFWRNQIPIYNADHEITEIRDGASLISPCRGFSPSLSRFSNQKRGA* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1000 510 Pfam SANTA (SANT Associated) 29 121 IPR015216 -
Gso13g1000 510 MobiDBLite consensus disorder prediction 358 382 - -
Gso13g1000 510 PANTHER MIS18-BINDING PROTEIN 1 16 502 - -
Gso13g1000 510 MobiDBLite consensus disorder prediction 417 438 - -
Gso13g1000 510 MobiDBLite consensus disorder prediction 277 296 - -
Gso13g1000 510 PANTHER MIS18-BINDING PROTEIN 1 16 502 IPR039110 -
Gso13g1000 510 MobiDBLite consensus disorder prediction 356 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1000 Gso-Chr13 24382645 24387855 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso13g1000 SANTA 1.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1000 - - gmx:100790080 1023.08