Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0992 ATGAATCACTGTGTTCCAGATTTCGAAACCCAAATGGACGACGACTTAGAATTCTCAATTCCCGTCTCAAAGAAACCCTCCACGCAAAACGACGAGATCATGGAACTGTTATGGCAAAACGGCCAGGTCGTGATGCAAAGCCAGAACCAACGACCCTTCAGAAAGCCGCCGCAGCCGCCGGAGGCCAACGGCGGCGACGGCGCCATTTCGGCGAGGGAGATTCGATCATCTGAAGCAGAAAACTACAATAATAGCCAACACTTGTTCATGCAAGAAGACGAAATGGCGGCGTGGCTGCACTATCCAATCCACGAAGATCCTCCACCCTTCGATCACCACGATTTCGGCGCCGACATCTTCTACCCGCCGCCAAACGCCACCGCGAGCCAGAATCGCGGCAGCGCCGCCGTGCAGTCCTCCTTTCGCACGACAGAGCTCTGGCATCCGGCTCCTCGACCTCCGATTCCGCCGCCGAGGCGGCCGGAGCATGCGCCGAGCAGGATACACAATTTCGCGCACTTCACGAAGCACGGCAATGCGTCGTCGAGCTCGAAGGCGGCCGCGGCGGCGCAGCCGACGGTGGTGGATTCTTGCGAAACGCCGGTCGCGACGGCGGAGCACGCGGAAACCGGCCGCGCCAGAGCCGCCGCCGGCAAAACCGCGGTGTCGGACGGCGGGAGAGAGACGGCGACGTGCGACGTGACGGTGACGTCATCGCCTGGCGATTCGAGCGGGAGTGCCGAACCGGTCGAGAGAGAACCGATGGCGGACCGGAAGAGGAAGGGAAGGGAACATGAGGAATCGGAGTTTCAGAGCGAGGATGTTGATTTTGAATCTCCCGAAGCTAAAAAGCAAGTTCATGGTTCTACATCTACAAAGAGATCTCGTGCTGCAGAAGTCCATAATCTCTCTGAGAGGCGCCGTCGAGATAGAATTAATGAAAAGATGAAAGCTTTGCAAGAACTTATACCTAGGTGCAACAAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATTGAGTACTTGAAGTCACTGCAATTACAAGTGCAGATGATGTCCATGGGATATGGCATGGTACCTATGATGTTTCCTGGAATACAGCAGTATATGCCACCAATGGGAATGGGGATTGGGATGGGGATGGGCATGGAAATGGGAATGGGAATGAACAGACCAGTAATGCCATTTACCAATATGTTAGCTAGTTCGACTTTGCCAGCAGCAACTGCGGCTGTTCATTTGGGACCAAGGTTTCCTATGCCTCCTTTCCATATGCCCCATGTTGCTGCACCCGATTCATCCAGAATGCAAGGAGCAAATCACCCAGATAATAATATGCTTAACTCACTTGGTACACTAGATCCAGATCAATCACGTATCCCAAACTTCACTGATCCTTATCAACAGTACCTCGGTCTCCAACAGGCACAGTTACAATTAATGCAGACAATGAACCAACAAAATGTCAGCAAGCCTAGTAGCAGTAGAGGTCAAGAGAATCCAGAAAAGCATCAGTCAGACGAAACATGA 1530 0.5288 MNHCVPDFETQMDDDLEFSIPVSKKPSTQNDEIMELLWQNGQVVMQSQNQRPFRKPPQPPEANGGDGAISAREIRSSEAENYNNSQHLFMQEDEMAAWLHYPIHEDPPPFDHHDFGADIFYPPPNATASQNRGSAAVQSSFRTTELWHPAPRPPIPPPRRPEHAPSRIHNFAHFTKHGNASSSSKAAAAAQPTVVDSCETPVATAEHAETGRARAAAGKTAVSDGGRETATCDVTVTSSPGDSSGSAEPVEREPMADRKRKGREHEESEFQSEDVDFESPEAKKQVHGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGYGMVPMMFPGIQQYMPPMGMGIGMGMGMEMGMGMNRPVMPFTNMLASSTLPAATAAVHLGPRFPMPPFHMPHVAAPDSSRMQGANHPDNNMLNSLGTLDPDQSRIPNFTDPYQQYLGLQQAQLQLMQTMNQQNVSKPSSSRGQENPEKHQSDET* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0992 509 MobiDBLite consensus disorder prediction 251 283 - -
Gso13g0992 509 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 508 IPR031066 -
Gso13g0992 509 SMART finulus 302 351 IPR011598 GO:0046983
Gso13g0992 509 CDD bHLH_AtPIF_like 296 359 - -
Gso13g0992 509 Pfam Helix-loop-helix DNA-binding domain 300 346 IPR011598 GO:0046983
Gso13g0992 509 MobiDBLite consensus disorder prediction 46 68 - -
Gso13g0992 509 MobiDBLite consensus disorder prediction 200 311 - -
Gso13g0992 509 MobiDBLite consensus disorder prediction 481 509 - -
Gso13g0992 509 MobiDBLite consensus disorder prediction 433 464 - -
Gso13g0992 509 Coils Coil 302 322 - -
Gso13g0992 509 MobiDBLite consensus disorder prediction 145 165 - -
Gso13g0992 509 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 296 345 IPR011598 GO:0046983
Gso13g0992 509 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 299 374 IPR036638 GO:0046983
Gso13g0992 509 Gene3D - 291 354 IPR036638 GO:0046983
Gso13g0992 509 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 508 - -
Gso13g0992 509 MobiDBLite consensus disorder prediction 230 245 - -
Gso13g0992 509 MobiDBLite consensus disorder prediction 481 496 - -
Gso13g0992 509 MobiDBLite consensus disorder prediction 437 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0992 Gso-Chr13 24315865 24321629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0992 1 351 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 40.731 6.02e-61 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso13g0992 HLH 6.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0992 - - gmx:100788491 919.072