Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0979 ATGGCTGCCACCGCCAATCCTATAATTGGTTCCCATGTTTGGGTGGAGGATTCTCAAGTAGCTTGGATAGATGGTGAGGTCTTGGAGGTTAAGGGAGAAGAAATCAAAGTTCTTTGCACTTCAGGGAAGACGGTTGTTGTTAAAGCTTCTAGTGTTTATCATAAAGATACCGAAGCCCCCCCATGTGGAGTGGATGATATGACAAAACTTGCTTATCTACATGAACCTGGTGTCCTGGATAATCTGAGATCAAGATATGATATCAATGAAATTTATACTTACACCGGGAATATATTGATTGCTGTGAATCCTTTCATAAGGCTTCCTCATTTATACGATAGCCATATGATGGCACAATATAAAGGAGCAGGTTTTGGTGAGCTAAGCCCGCATCCTTTTGCTGTTGCAGATGCAGCATATAGACTTATGATTAATGAGGGAATCAGCCAGTCAATATTGGTTAGTGGTGAAAGTGGGGCTGGGAAAACGGAAAGCACCAAGTTACTCATGCGCTATCTTGCTTACATGGGAGGGAGAGCTAATAATGCTTCTGAAGGTAGATCTGTTGAGCAGAAAGTCCTGGAGTCCAATCCTGTTTTAGAAGCCTTTGGCAATGCAAAGACTGTTAGAAACAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAATTTGACCAGAGGGGAAGGATTTCTGGGGCTGCTATCAGAACTTATCTGCTGGAAAGATCACGTGTTTGCCAGTTGTCAGATCCAGAGAGGAACTATCACTGTTTCTATATGCTCTGTGCTGCACCTCCGGAGGATATTCAGAAGTACAAATTAGGAAATCCTAGAGCATTTCATTATCTGAATCAAACAAATTGCTTTGAGTTGGAAGGGGTTGATGAGTTAAAAGAATATCAGGATACGAGGAGAGCAATGGACGTTGTTGGAATAAGTTCTGAGGAACAGGAAGCAATATTTCGAGTGGTTGCTGCAATTTTGCATCTTGGCAACATTGAATTTACAAAAGGGCAAGAAATTGACTCATCTGTGCCCAAAGATGAAAAATCTTGGTTTCATCTACGAACTGCTGCTGAACTTTTCATGTGTAATGCAAAGGCACTTGAAGATTCTCTTTGCAAGCGTGTAATTGTTACTCGTGATGAAACTATAACAAAATGGCTGGATCCAGAAGCTGCTGCACTCAGCCGAGATGCTTTGGCTAAGATTGTGTACACGAGGTTGTTTGATTGGCTGGTGGATAAAATAAATAATTCAATTGGTCAAGACCCTGACTCAAAGTCCTTAATTGGTGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGACTAACAGTTTTGAGCAATTTTGTATCAATTTGACCAATGAAAAGCTTCAGCAACATTTTAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAAAAAAGAAGAGATTGATTGGAGTTACATTGAGTTTGTTGATAATAAAGATGTTCTGGATCTCATTGAAAAGAAACCTGGTGGCATTATTGCTCTTCTTGATGAAGCTTGTATGTTTCCTAGATCAACACATGAAACTTTTGCCCAAAAGCTGTATCAGACATTCAAAAACCATAAAAGGTTCAGCAAACCCAAGTTGGCACGTAGTGACTTCACAATTTGCCATTATGCGGGTGATGTCACGTATCAAACTGAATTGTTCCTGGACAAGAACAAAGATTATGTTGTTGCAGAACACCAGGAACTTCTTTATGCTTCCAAATGCCCCTTTGTGTCTGGTTTGTTCCCCCCTTCACCTGAGGAATCGTCCAAACAATCGAAGTTCTCTTCAATAGGTTCCCGGTTTAAGCAACAATTGCAAGCACTACTTGAAACTCTCAGTGCCACTGAGCCACACTACATTCGCTGTGTGAAACCCAATAATCTTCTTAAGCCAGCAATTTTTGAGAATAAAAATGTTTTACAGCAACTGCGATGTGGGGGAGTTATGGAGGCAATTAGGATAAGCTGTGCCGGGTATCCTACTAGGAAGACTTTTGATGAATTTGCAGACCGATTTGGACTTCTTGCACCTGAAGCTTTGGACGGGAGTTCTGATGAGGTCACTGCTTGCAAAAGGATTCTGGAGAAGGTTGGACTTAAGGGCTATCAGATTGGTAAAACAAAAGTGTTTCTTCGAGCTGGTCAAATGGCAGATCTAGATACTCGTAGAAGTGAGGTCTTAGGAAAGTCAGCAAGCATTATTCAGAGAAAAGTTCGTACCTATTTGGCCCGCCGTAGTTTTGTCTTGATACATTTGTCTGCTATACAGATTCAAGCTGCATGCAGAGGTCAACTTGCTCGGCAAGTTTACGAGGGATTGCAGCGGGAGGCTTCTAGTGTGAAGATTCAAAGGTATTTACGCATGCATGTTGCTAGGAAGGCATATAAAGAATTGTGTAGCTCGGCTGTTTCTATTCAGACTGGTATGCGAGGGATGGCTGCTCGTACTGAGCTACGCTTCAGGAAGCAAACTCGTGCTGCTATTGTCATTCAGAGCCACTGCCGGAAATACCTGGCTCAACATCATTTTACAAACTTAAAGAAGGCAGCAATTGCAACACAATGTGCATGGAGAGGAAAAGTTGCTCGGCGAGAATTACGACAGCTCAAGATGGCTGCAAGAGAAACTGGAGCTCTCCAAGCTGCCAAAAATAAGCTTGAAAAACAAGTTGAAGACCTTACATTGAGGTTGCAGCTGGAAAAACGCCTGAGGATTGACATTGAAGAATCAAAAACACAAGAAAATGAAAAACTACAATCTGCTTTGCAAGCGATGCAACTTCAGTTTAAAGAAACTAAGTTGTTACTTAAAAAGGAGCGTGAGGCTGAAAAAAGAGAAGCTGAGAGAGCGCCTTTCATACAGGAGGTTCCTGTTGTTGACCATGCTTTGTTGGAGAAGCTCACTAGTGAAAATGAGAAACTCAAGACTTTGGTGAGTTCATTGGAAAAGAAAATTGATGAAACAGAAAAAAGATACGAAGAGGCAAACAAAGTTAGTGAAGAAAGGTTGAAGCAGGCTTTGGATGCCGAATCAAAAATAATCCAGTTGAAGACTGCTATGCAAAGACTCGAAGAGAAATTCTCAGATATGGAAACCGAAAACCAGGTTCTTCGGCAACAGTCTCTGCTAGACTCATCTGCAAAAACAGTGTCAGAACACCTTTCTACCCACATATCTGAGAAGTTGGAAAATGGTCACCATGTGGTGGAAGATCAGAAAACTTCTGAAGCACAGAATGTCACACCTGTGAAGAAGTTTGGTACAGAATCTGATGGCAAATTGAGGAGATCCTTCATTGAACGTCAACATGAGAATGTTGATGCACTTGTCAACTGTGTTATGAAAAATATTGGTTTCCATCATGGAAAGCCTGTTGCTGCATTTACCATTTACAAATGTCTTCTCCACTGGAAATCATTTGAGGCTGAAAGAACAAGTGTATTTGATCGCCTTATCCAGATGATTGGTTCTGCAATTGAGAATCAAGATGACAATGATCTTATGGCCTATTGGCTGTCAAATTTGTCTGCACTATTGTTTTTGCTCCAGCAAAGTCTAAAATCCGGTGGTGCAGCTGATGCCACTCCTGTAAAAAAACCACCAAATCCGACATCCCTCTTTGGAAGAATGACTATGGGTTTTCGTTCATCTCCTTCTTCTGCCAACCTTCCTACCCCACCATTGGACGTTGTACGCAAAGTAGAAGCTAAATATCCTGCTTTGCTTTTCAAGCAACAGCTCACAGCCTATGTGGAGAAAATATACGGTATCCTTCGGGACAACTTGAAGAAAGAATTGGCATCAATGCTTTCGTTATGTATACAGGCACCAAGAACATCCAAGGGAGTGCTACGATCTGGCCGATCCTTTGGTAAAGATTCTCCCATGGGTCACTGGCAGAGTATTATAGAATCCCTGAACACTCTCCTCTGTACTCTGAAAGAAAACTTTGTACCTCCAGTTCTTATCCAAAAGATCTTCACTCAAACATTCTCATATATTAATGTTCAACTCTTCAATAGTCTTCTTCTGCGTCGTGATTGCTGCACATTCAGCAATGGGGAATATGTGAAAGCTGGTTTAGCAGAATTGGAGTTGTGGTGCTGCCAAGCAAAGGAGGAGTATGCAGGTTCATCTTGGGATGAGCTTAAGCATATAAGACAAGCTGTTGGATTCTTGGTTATTCATCAGAAGTATAGGATTTCCTATGATGAAATCATTAATGATTTATGCCCAATCATGAGTGTCCAGCAGCTATACAGAATATGTACACTTTACTGGGATGCTAACTACAATACTCGAAGTGTATCTCCAGATGTCCTTTCAAGCATGAGAGTACTTATGGCTGAGGACTCTAATAATGCTCAGAGTGATTCTTTCTTGTTGGATGACAGTTCCAGCATCCCCTTCTCAGTGGATGACTTCTCTACATCACTGCAAGAGAAGGATTTCTCTGACATGAAACCAGCGGATGAGCTGCTTGAGAATCCCGCCTTCCGATTTTTAAATGAGTTGGCAAGGGAAGCTTAG 4560 0.4136 MAATANPIIGSHVWVEDSQVAWIDGEVLEVKGEEIKVLCTSGKTVVVKASSVYHKDTEAPPCGVDDMTKLAYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFIRLPHLYDSHMMAQYKGAGFGELSPHPFAVADAAYRLMINEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRANNASEGRSVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQRGRISGAAIRTYLLERSRVCQLSDPERNYHCFYMLCAAPPEDIQKYKLGNPRAFHYLNQTNCFELEGVDELKEYQDTRRAMDVVGISSEEQEAIFRVVAAILHLGNIEFTKGQEIDSSVPKDEKSWFHLRTAAELFMCNAKALEDSLCKRVIVTRDETITKWLDPEAAALSRDALAKIVYTRLFDWLVDKINNSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNKDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQELLYASKCPFVSGLFPPSPEESSKQSKFSSIGSRFKQQLQALLETLSATEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKTFDEFADRFGLLAPEALDGSSDEVTACKRILEKVGLKGYQIGKTKVFLRAGQMADLDTRRSEVLGKSASIIQRKVRTYLARRSFVLIHLSAIQIQAACRGQLARQVYEGLQREASSVKIQRYLRMHVARKAYKELCSSAVSIQTGMRGMAARTELRFRKQTRAAIVIQSHCRKYLAQHHFTNLKKAAIATQCAWRGKVARRELRQLKMAARETGALQAAKNKLEKQVEDLTLRLQLEKRLRIDIEESKTQENEKLQSALQAMQLQFKETKLLLKKEREAEKREAERAPFIQEVPVVDHALLEKLTSENEKLKTLVSSLEKKIDETEKRYEEANKVSEERLKQALDAESKIIQLKTAMQRLEEKFSDMETENQVLRQQSLLDSSAKTVSEHLSTHISEKLENGHHVVEDQKTSEAQNVTPVKKFGTESDGKLRRSFIERQHENVDALVNCVMKNIGFHHGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENQDDNDLMAYWLSNLSALLFLLQQSLKSGGAADATPVKKPPNPTSLFGRMTMGFRSSPSSANLPTPPLDVVRKVEAKYPALLFKQQLTAYVEKIYGILRDNLKKELASMLSLCIQAPRTSKGVLRSGRSFGKDSPMGHWQSIIESLNTLLCTLKENFVPPVLIQKIFTQTFSYINVQLFNSLLLRRDCCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEIINDLCPIMSVQQLYRICTLYWDANYNTRSVSPDVLSSMRVLMAEDSNNAQSDSFLLDDSSSIPFSVDDFSTSLQEKDFSDMKPADELLENPAFRFLNELAREA* 1520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0979 1519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 788 885 IPR027417 -
Gso13g0979 1519 ProSiteProfiles IQ motif profile. 856 885 IPR000048 GO:0005515
Gso13g0979 1519 Coils Coil 918 938 - -
Gso13g0979 1519 Gene3D - 441 625 - -
Gso13g0979 1519 Pfam IQ calmodulin-binding motif 739 757 IPR000048 GO:0005515
Gso13g0979 1519 Pfam IQ calmodulin-binding motif 834 853 IPR000048 GO:0005515
Gso13g0979 1519 Pfam IQ calmodulin-binding motif 763 780 IPR000048 GO:0005515
Gso13g0979 1519 Pfam IQ calmodulin-binding motif 788 806 IPR000048 GO:0005515
Gso13g0979 1519 Pfam IQ calmodulin-binding motif 858 877 IPR000048 GO:0005515
Gso13g0979 1519 Gene3D - 254 312 - -
Gso13g0979 1519 Pfam Myosin head (motor domain) 64 722 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso13g0979 1519 ProSiteProfiles Dilute domain profile. 1159 1460 IPR002710 -
Gso13g0979 1519 PANTHER MYOSIN 7 1512 - -
Gso13g0979 1519 Pfam Myosin N-terminal SH3-like domain 10 52 IPR004009 GO:0003774|GO:0005524|GO:0016459
Gso13g0979 1519 ProSiteProfiles IQ motif profile. 760 789 IPR000048 GO:0005515
Gso13g0979 1519 SMART MYSc_2a 57 735 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso13g0979 1519 Gene3D Myosin VI head, motor domain, U50 subdomain 314 603 - -
Gso13g0979 1519 Gene3D Kinesin motor domain 65 664 IPR036961 -
Gso13g0979 1519 ProSiteProfiles Myosin motor domain profile. 62 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso13g0979 1519 ProSiteProfiles IQ motif profile. 810 837 IPR000048 GO:0005515
Gso13g0979 1519 Coils Coil 974 1050 - -
Gso13g0979 1519 Gene3D - 668 735 - -
Gso13g0979 1519 PANTHER MYOSIN-14 7 1512 - -
Gso13g0979 1519 Gene3D - 835 884 - -
Gso13g0979 1519 Gene3D - 787 834 - -
Gso13g0979 1519 Gene3D - 736 786 - -
Gso13g0979 1519 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso13g0979 1519 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso13g0979 1519 PRINTS Myosin heavy chain signature 198 225 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso13g0979 1519 PRINTS Myosin heavy chain signature 431 459 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso13g0979 1519 PRINTS Myosin heavy chain signature 484 512 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso13g0979 1519 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Gso13g0979 1519 ProSiteProfiles IQ motif profile. 785 814 IPR000048 GO:0005515
Gso13g0979 1519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 787 IPR027417 -
Gso13g0979 1519 SMART DIL_2 1335 1442 IPR002710 -
Gso13g0979 1519 Pfam DIL domain 1336 1439 IPR002710 -
Gso13g0979 1519 SMART iq_5 855 877 IPR000048 GO:0005515
Gso13g0979 1519 SMART iq_5 807 829 IPR000048 GO:0005515
Gso13g0979 1519 SMART iq_5 759 781 IPR000048 GO:0005515
Gso13g0979 1519 SMART iq_5 832 854 IPR000048 GO:0005515
Gso13g0979 1519 SMART iq_5 736 758 IPR000048 GO:0005515
Gso13g0979 1519 SMART iq_5 784 806 IPR000048 GO:0005515
Gso13g0979 1519 CDD MyosinXI_CBD 1110 1483 IPR037975 GO:0007015
Gso13g0979 1519 ProSiteProfiles IQ motif profile. 833 862 IPR000048 GO:0005515
Gso13g0979 1519 Coils Coil 879 913 - -
Gso13g0979 1519 CDD MYSc_Myo11 76 722 IPR036018 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0979 Gso-Chr13 24159564 24178397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0979 1 1513 Myosins gene family AT5G43900 75.494 0.0 2366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0979 K10357 - gmx:100786893 2942.53