Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0971 ATGGCGCTATGGATGGAAAAGGGTTCAGAGCCATTAACCGAAACCGAGAAGGCAGACCTTGAAGCCATTGCTGCACTCAAAGAGTCTGCAGCCTTTGAATTCAAGGAAAAGGGTAATCAATATGTGAAGATGGGCAAGAAGCATTACTCTGATGCCATTGATTACTACACGAGGGCAATTGATCAGAAAGCCTTGAGTGACTCTGAGACCTCTATTCTCTTTGCAAATAGAGCCCATGTGAATTTGCTTCTAGGGAATCTTAGACGTGCTCTAACAGATTCTAATGAGGCCCTCAAGTTGTGCCCTTCAAATATAAAGGCAATTTATAGAGCTGCGAAAGCTTCTCTTTCACTAAACATGTTGGCTGAAGCAAGAGAGTATTGCTTGAAGGGTCTTCAGTTTGACCCCAATAATGAGGACTTGAAGAAGCTTGACCGGCAGATCGGTCTCAAGATATCAGAGAAGGAAAAGCATGAGGCTGAAGCCTCCAAGGCTGTCGCGGAGACAAAGAAACTTGTGTCTGCGATTGAAAATAGAGGCTTGAAGATTGGAAAGGCAATGTATCTAGAACTTACTGGACTACGGAAACCTGTGTTGGATAAAAGTAATATCCTTCATTGGCCTGTTCTTCTTCTGTATGCAGAGGTTATGTCCAGTGACTTCATTGAGGATTTCTGTGAGACTGACATGTTTTCGGTTCACCTTGATATGATATTTGCAGAAGATCAGCCGTTGTCATGGGATGTTGAAAACAACTACAAACGTGAATTTATTGAATTATACTATGAGCAGACTGGTTCTGGACTTTGTCTATCAAAGGAAAAACTTCTTCATTGTCTATTAGAGGGAACTGCAGCTGCTCACAGGGAAGGTGTTGGTGATGAAGAGAAAGACACAGTTGAGGATTATAAGCAACACATGGGTTCCCCTAAATGGATCAAAGTGAATGAAAGGAGAACACTCCACGATGTTCTCAAAGAGCCTAATTTCATCATTCCTGGGATCCCAGTCTTCTATGTTGTTTCTAAGCGATCCAGCTTTTATGGCAAGTTCAAAGCTGGGAAGTGGGCACCTCCAAGTATATGA 1086 0.4254 MALWMEKGSEPLTETEKADLEAIAALKESAAFEFKEKGNQYVKMGKKHYSDAIDYYTRAIDQKALSDSETSILFANRAHVNLLLGNLRRALTDSNEALKLCPSNIKAIYRAAKASLSLNMLAEAREYCLKGLQFDPNNEDLKKLDRQIGLKISEKEKHEAEASKAVAETKKLVSAIENRGLKIGKAMYLELTGLRKPVLDKSNILHWPVLLLYAEVMSSDFIEDFCETDMFSVHLDMIFAEDQPLSWDVENNYKREFIELYYEQTGSGLCLSKEKLLHCLLEGTAAAHREGVGDEEKDTVEDYKQHMGSPKWIKVNERRTLHDVLKEPNFIIPGIPVFYVVSKRSSFYGKFKAGKWAPPSI* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0971 361 SUPERFAMILY TPR-like 22 157 IPR011990 GO:0005515
Gso13g0971 361 SMART tpr_5 31 66 IPR019734 GO:0005515
Gso13g0971 361 SMART tpr_5 71 104 IPR019734 GO:0005515
Gso13g0971 361 SMART tpr_5 105 138 IPR019734 GO:0005515
Gso13g0971 361 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 357 - -
Gso13g0971 361 Coils Coil 141 170 - -
Gso13g0971 361 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 357 - -
Gso13g0971 361 Pfam Tetratricopeptide repeat 106 138 IPR019734 GO:0005515
Gso13g0971 361 Gene3D Tetratricopeptide repeat domain 27 174 IPR011990 GO:0005515
Gso13g0971 361 Pfam Cns1/TTC4 Wheel domain 201 270 IPR044059 GO:0051879
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0971 Gso-Chr13 24088197 24093063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0971 30 160 Calmodulin-binding Proteins AT3G25230 33.099 6.55e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0971 K24927 - gmx:100783179 706.057