Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso13g0968 | ATGGGTGTCGCACGTTTTTTCCATGATGTCCTAGGATTGCCCGTGTTGGAACTTGCGACAATCTGCATGAACCTGACTTTTGTACTTTTGTTTCTCTTTGTTGTCTCGGTGAGGCGTGTTCTTGTGTATGGGGGTGGATTTCGATTCGGTAAGGATGGAAACAGCGGCAATGCTAGCCCAATTTGCAGTGTCATTGATGAAGAAACGCGTGGTGTTAGAATCGGTGTGGGGTTCAAGTTGTCAGTGTTGTCTTGTTTCTATGTTCTGTTTGTGAATGTTTTGGCGTTGGGATTTGAAGGGGGTGCTTTGATTTGGGGTGAGGCTAATGGGGATGCTGACGTGGATTTGTCTCTTCTTGCTGTCCCTGCTGCACAGGGTTTGGCTTGGTTTGTGTTGAGCTTCTCGGCCTTGTATTGCAAGTTCAAGGTGTCAGAGAGGTTCCCATTTTTGTTGAGAGCTTGGTGGTTTTTGTCCTTTGTTATTTGCTTGTGTACTTTGTATGTTGATGGGAGAGGATTTTGGGAGGAGGGTTCTGAACATCTATGTTCTCGTGCTGTTGCAAATGTTGCTGTCACACCAGCTCTTGCATTTTTGTGTGTGGTTGCAATTAGGGGTGGTACTGGTATAAGGGTTTGTGGGAACTCTGATCTTCAAGAGCCATTGCTTGTTGATGAGGAACCGGGGTGTCTCAAGGTTACTCCTTATAGAGATGCTGGACTTTTTAGTTTGGCCACTCTTTCTTGGCTGAATCCACTTCTTTCCATTGGTGCTAAGAGACCGCTCGAGCTTAAGGATATTCCACTTGTTGCACCAAGAGATAGAGCCAAGACTAGTTATAAGGTTTTGAATTCTAATTGGGAGAGATTGAAGGCTGAAAATGAGAATCCCTCTAAGCAGCCTTCGTTGGCTTGGGCGATTCTCAAGTCATTCTGGAAGGACGCAGCCCTGAATGCCATCTTTGCTGGTATGAATACTTTGGTGTCATATGTAGGTCCATACATGATAAGTTACTTTGTGGATTACTTGGGTGGCAAGGAGACTTTCCCCCATGAGGGATATATCCTTGCTGGTATTTTCTTTGTGGCAAAGCTTGTGGAGACTGTGACAACTAGGCAGTGGTATCTGGGAGTGGACATCTTGGGTATGCATGTTAGGTCTGCTCTAACTGCAATGGTATATAGGAAGGGACTTAGACTGTCAAGCTCAGCCAAGCAGAGTCACACAAGTGGGGAGATTGTCAACTACATGGCAGTTGATGTTCAGAGGGTAGGGGACTACTCTTGGTACCTTCATGACATGTGGATGCTTCCTATGCAGATTGTTCTTGCCCTTTTAATTTTGTATAAGAATGTTGGAATTGCTTCTGTTGCAACATTGATTGCTACAATCATTTCCATTGTTGTCACTGTTCCTGTGGCTAGGGTGCAAGAAGATTATCAGGACAAATTGATGGCAGCTAAGGATGAAAGGATGAGAAAGACATCAGAGTGTCTTAGGAATATGAGGATTCTCAAGCTGCAAGCTTGGGAGGACCGATATCGATTGAAGTTGGAGGAAATGCGTGGAGTAGAGTTCAAGTGGCTAAGGAAAGCACTCTATTCTCAGGCTTGCATAACTTTCATGTTCTGGAGCTCCCCTATATTTGTTTCAGCTGTTACTTTTGCTACTTCCATATTGTTGGGGGGTCAGTTGACAGCAGGTGGTGTTCTCTCTGCTCTAGCTACTTTCAGGATTCTCCAAGAACCTCTGAGGAATTTTCCTGACTTGGTATCAACCATGGCTCAGACAAAAGTTTCTCTTGATCGCATATCTGCTTTCCTGCAGGATGAAGAATTGCAGGAAGATGCGACTATCGTCTTGCCACCTGGCATTTCTAACACGGCCATAGAAATTATGGATGGTGTCTTCTGCTGGGACTCTTCTTTGCCAAGGCCTACTCTATCGGGAATACATGTGAAAGTGGAAAGAGGGATGACTGTGGCTGTTTGTGGCATGGTTGGTTCCGGTAAATCAAGTTTTCTTTCTTGCATCCTTGGAGAGATTCCCAAGCTGTCTGGTGAAGTAAAAGTGTGTGGTTCTGTTGCATATGTCTCCCAATCTGCTTGGATACAGTCAGGAAATATAGAAGAAAATATCCTGTTTGGCACCCCAATGGACAAAGCAAAGTACAAGAATGTTCTTCATGCTTGCTCATTGAAAAAGGACCTAGAACTTTTCTCACATGGAGACCAAACAATTATTGGTGACAGAGGTATAAATTTGAGTGGTGGTCAGAAGCAGCGGGTTCAGCTTGCTCGAGCACTCTACCAAGATGCTGATATTTACCTACTTGATGATCCCTTCAGTGCAGTTGATGCCCACACTGGATCAGAATTATTTAGGGAGTATGTATTGACAGCACTAGCAGATAAAACAGTCATTTTTGTGACCCATCAAGTTGAATTTCTTCCTGCTGCTGATATGATAATGGTTCTTAAAGAAGGCCACATCATACAGGCAGGAAAATATGATGATCTTTTACAAGCAGGAACAGATTTTAAAACTCTAGTTTCAGCTCACCATGAAGCAATAGAGGCTATGGATATTCCTAATCACTCAGAAGATTCAGATGAAAATGTACCCTTGGATGACACTATTATGACCAGTAAGACATCCATTTCTTCTGCAAATGATATTGAGAGTTTGGCTAAGGAAGTTCAGGAGGGATCATCAGATCAGAAAGTAATTAAGGAGAAGAAGAAAGCAAAACGCTCGAGAAAAAAACAGCTTGTTCAGGAAGAGGAGAGGGTTAGAGGTAGAGTCAGCATGAAGGTGTACTTGTCATACATGGCTGCAGCATACAAAGGTGTATTGATTCCACTCATAATCATTGCACAAACATTATTTCAGTTCCTTCAGATTGCCAGTAATTGGTGGATGGCTTGGGCAAATCCTCAAACTAAGGGAGACCAACCCAAAGTAACTCCCACAGTTCTTCTTCTTGTTTACATGGCCCTTGCTTTTGGCAGCTCATGGTTCATCTTTGTAAGGGCTGTTCTCGTGGCTACATTTGGTCTAGCAGCTGCACAGAAACTATTTTTTAACATGCTTAGAAGCATATTCCATTCACCAATGTCTTTCTTTGACTCTACACCAGCTGGAAGGATCTTGAATCGTGTTTCAATTGATCAAAGTGTTGTGGATCTTGATATTCCTTTTAGACTTGGAGGGTTTGCTTCATCAACAATACAACTTATTGGCATTGTTGCTGTAATGACAGATGTTACATGGCAAGTTTTGCTCCTAGTAGTCCCGTTGGCTATTATTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAATTAGTACGTATCGTGAGCATCCAAAAATCTCCAATTATACATCTTTTTGGTGAATCAATTGCTGGAGCAGCCACCATTAGAGGTTTTGGACAAGAAAAAAGGTTCATGAAGAGGAACCTCTATCTTCTGGATTGTTTTGCACGACCATTCTTCTGTAGTCTTGCAGCTATTGAGTGGCTCTGCCTGCGCATGGAATTACTTTCAACCTTTGTATTTGCTTTCTGCCTGGTATTACTTGTCAGCCTTCCCCATGGAAGTATTGATCCCAGCATGGCTGGACTTGCAGTAACATATGGCCTGAATTTAAATGCACGTCTATCACGATGGATACTTAGCTTTTGCAAACTTGAAAATAAAATCATATCCATTGAAAGAATTTATCAATACAGCCAAATTCCTAGTGAAGCACCAGCAATTGTTGAAGATTCTCGTCCTCCATCCTCATGGCCTGAGAATGGGACAATCCAATTAATTGATCTGAAGGTACGTTACAAGGAAAATCTTCCCGTGGTGCTTCACGGAGTATCCTGCACATTTCCTGGTGGGAAGAAGATTGGAATAGTTGGTCGTACTGGCAGTGGCAAATCTACCTTGATTCAAGCATTATTTCGATTGGTTGAACCGGAGGCAGGGAGTATCCTTATAGACAACATTAATATTTCATCAATTGGTCTTCATGATCTTAGAAGTCATTTGAGTATCATACCACAAGATCCAACCTTATTTGAAGGCACCATTCGAAGCAATCTTGATCCTCTTGATGAGCACTCTGATAAAGAGATTTGGGAGGCCCTTGATAAGTCACAACTTGGAGATATAATCCGTGAGACAGAGCGAAAGCTTGATATGCCAGTGCTGGAGAATGGAGATAATTGGAGTGTAGGACAGTGTCAACTTGTTTCTTTGGGTCGAGCTCTGCTGAAGCAATCAAAGATACTTGTACTTGATGAAGCAACGGCATCGGTTGATACTGCTACTGATAATCTTATCCAGAAGATTATTCGAAGAGAGTTTAGAGATTGCACTGTGTGCACTATTGCACATCGTATTCCTACTGTTATTGACAGTGATCTAGTGCTGGTACTCAGTGATGGTCGAGTTGCAGAGTTTGATAGTCCATCTAGGCTGTTAGAGGACAAGTCATCTATGTTTCTGAAGTTGGTGACGGAGTATTCATCGCGGTCAAGTGGCATACCAGACTTTTAA | 4554 | 0.4275 | MGVARFFHDVLGLPVLELATICMNLTFVLLFLFVVSVRRVLVYGGGFRFGKDGNSGNASPICSVIDEETRGVRIGVGFKLSVLSCFYVLFVNVLALGFEGGALIWGEANGDADVDLSLLAVPAAQGLAWFVLSFSALYCKFKVSERFPFLLRAWWFLSFVICLCTLYVDGRGFWEEGSEHLCSRAVANVAVTPALAFLCVVAIRGGTGIRVCGNSDLQEPLLVDEEPGCLKVTPYRDAGLFSLATLSWLNPLLSIGAKRPLELKDIPLVAPRDRAKTSYKVLNSNWERLKAENENPSKQPSLAWAILKSFWKDAALNAIFAGMNTLVSYVGPYMISYFVDYLGGKETFPHEGYILAGIFFVAKLVETVTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSSAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDMWMLPMQIVLALLILYKNVGIASVATLIATIISIVVTVPVARVQEDYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRLKLEEMRGVEFKWLRKALYSQACITFMFWSSPIFVSAVTFATSILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRISAFLQDEELQEDATIVLPPGISNTAIEIMDGVFCWDSSLPRPTLSGIHVKVERGMTVAVCGMVGSGKSSFLSCILGEIPKLSGEVKVCGSVAYVSQSAWIQSGNIEENILFGTPMDKAKYKNVLHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFREYVLTALADKTVIFVTHQVEFLPAADMIMVLKEGHIIQAGKYDDLLQAGTDFKTLVSAHHEAIEAMDIPNHSEDSDENVPLDDTIMTSKTSISSANDIESLAKEVQEGSSDQKVIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYKGVLIPLIIIAQTLFQFLQIASNWWMAWANPQTKGDQPKVTPTVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFFNMLRSIFHSPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASSTIQLIGIVAVMTDVTWQVLLLVVPLAIICLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCLVLLVSLPHGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPAIVEDSRPPSSWPENGTIQLIDLKVRYKENLPVVLHGVSCTFPGGKKIGIVGRTGSGKSTLIQALFRLVEPEAGSILIDNINISSIGLHDLRSHLSIIPQDPTLFEGTIRSNLDPLDEHSDKEIWEALDKSQLGDIIRETERKLDMPVLENGDNWSVGQCQLVSLGRALLKQSKILVLDEATASVDTATDNLIQKIIRREFRDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDSPSRLLEDKSSMFLKLVTEYSSRSSGIPDF* | 1518 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso13g0968 | 1517 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1271 | 1505 | IPR003439 | GO:0005524 | |
Gso13g0968 | 1517 | CDD | ABCC_MRP_domain2 | 1269 | 1489 | - | - | |
Gso13g0968 | 1517 | CDD | ABC_6TM_ABCC_D1 | 316 | 603 | IPR044746 | GO:0140359 | |
Gso13g0968 | 1517 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 629 | 852 | IPR003439 | GO:0005524 | |
Gso13g0968 | 1517 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 625 | 851 | IPR027417 | - | |
Gso13g0968 | 1517 | SMART | AAA_5 | 656 | 837 | IPR003593 | - | |
Gso13g0968 | 1517 | SMART | AAA_5 | 1297 | 1482 | IPR003593 | - | |
Gso13g0968 | 1517 | CDD | ABCC_MRP_domain1 | 629 | 828 | - | - | |
Gso13g0968 | 1517 | ProSitePatterns | ABC transporters family signature. | 754 | 768 | IPR017871 | GO:0005524 | |
Gso13g0968 | 1517 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1262 | 1501 | IPR027417 | - | |
Gso13g0968 | 1517 | Gene3D | ABC transporter type 1, transmembrane domain | 913 | 1252 | IPR036640 | GO:0005524|GO:0016021 | |
Gso13g0968 | 1517 | Gene3D | ABC transporter type 1, transmembrane domain | 282 | 612 | IPR036640 | GO:0005524|GO:0016021 | |
Gso13g0968 | 1517 | SUPERFAMILY | ABC transporter transmembrane region | 304 | 614 | IPR036640 | GO:0005524|GO:0016021 | |
Gso13g0968 | 1517 | Pfam | ABC transporter transmembrane region | 954 | 1198 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Gso13g0968 | 1517 | Pfam | ABC transporter transmembrane region | 318 | 583 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Gso13g0968 | 1517 | Gene3D | - | 1254 | 1507 | IPR027417 | - | |
Gso13g0968 | 1517 | CDD | ABC_6TM_ABCC_D2 | 952 | 1246 | IPR044726 | GO:0140359 | |
Gso13g0968 | 1517 | Pfam | ABC transporter | 1288 | 1436 | IPR003439 | GO:0005524 | |
Gso13g0968 | 1517 | Pfam | ABC transporter | 647 | 781 | IPR003439 | GO:0005524 | |
Gso13g0968 | 1517 | Gene3D | - | 623 | 857 | IPR027417 | - | |
Gso13g0968 | 1517 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 315 | 595 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Gso13g0968 | 1517 | PANTHER | MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN | 63 | 1517 | - | - | |
Gso13g0968 | 1517 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY C | 63 | 1517 | - | - | |
Gso13g0968 | 1517 | Coils | Coil | 909 | 929 | - | - | |
Gso13g0968 | 1517 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 954 | 1224 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Gso13g0968 | 1517 | SUPERFAMILY | ABC transporter transmembrane region | 951 | 1251 | IPR036640 | GO:0005524|GO:0016021 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso13g0968 | Gso-Chr13 | 24045506 | 24054534 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso13g0968 | 639 | 845 | Calmodulin-binding Proteins | AT2G36910 | 31.718 | 5.54e-20 | 95.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso13g0968 | - | - | gmx:100781010 | 2945.22 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso19g1406 | 19 | 42874581 | 42883287 | Gso13g0968 | 13 | 24045506 | 24054534 | PCT | |
Gso3g1412 | 3 | 40058442 | 40066812 | Gso13g0968 | 13 | 24045506 | 24054534 | PCT | |
Gso13g0968 | 13 | 24045506 | 24054534 | Gso19g1406 | 19 | 42874581 | 42883287 | PCT | |
Gso13g0968 | 13 | 24045506 | 24054534 | Gso3g1412 | 3 | 40058442 | 40066812 | PCT |