Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0968 ATGGGTGTCGCACGTTTTTTCCATGATGTCCTAGGATTGCCCGTGTTGGAACTTGCGACAATCTGCATGAACCTGACTTTTGTACTTTTGTTTCTCTTTGTTGTCTCGGTGAGGCGTGTTCTTGTGTATGGGGGTGGATTTCGATTCGGTAAGGATGGAAACAGCGGCAATGCTAGCCCAATTTGCAGTGTCATTGATGAAGAAACGCGTGGTGTTAGAATCGGTGTGGGGTTCAAGTTGTCAGTGTTGTCTTGTTTCTATGTTCTGTTTGTGAATGTTTTGGCGTTGGGATTTGAAGGGGGTGCTTTGATTTGGGGTGAGGCTAATGGGGATGCTGACGTGGATTTGTCTCTTCTTGCTGTCCCTGCTGCACAGGGTTTGGCTTGGTTTGTGTTGAGCTTCTCGGCCTTGTATTGCAAGTTCAAGGTGTCAGAGAGGTTCCCATTTTTGTTGAGAGCTTGGTGGTTTTTGTCCTTTGTTATTTGCTTGTGTACTTTGTATGTTGATGGGAGAGGATTTTGGGAGGAGGGTTCTGAACATCTATGTTCTCGTGCTGTTGCAAATGTTGCTGTCACACCAGCTCTTGCATTTTTGTGTGTGGTTGCAATTAGGGGTGGTACTGGTATAAGGGTTTGTGGGAACTCTGATCTTCAAGAGCCATTGCTTGTTGATGAGGAACCGGGGTGTCTCAAGGTTACTCCTTATAGAGATGCTGGACTTTTTAGTTTGGCCACTCTTTCTTGGCTGAATCCACTTCTTTCCATTGGTGCTAAGAGACCGCTCGAGCTTAAGGATATTCCACTTGTTGCACCAAGAGATAGAGCCAAGACTAGTTATAAGGTTTTGAATTCTAATTGGGAGAGATTGAAGGCTGAAAATGAGAATCCCTCTAAGCAGCCTTCGTTGGCTTGGGCGATTCTCAAGTCATTCTGGAAGGACGCAGCCCTGAATGCCATCTTTGCTGGTATGAATACTTTGGTGTCATATGTAGGTCCATACATGATAAGTTACTTTGTGGATTACTTGGGTGGCAAGGAGACTTTCCCCCATGAGGGATATATCCTTGCTGGTATTTTCTTTGTGGCAAAGCTTGTGGAGACTGTGACAACTAGGCAGTGGTATCTGGGAGTGGACATCTTGGGTATGCATGTTAGGTCTGCTCTAACTGCAATGGTATATAGGAAGGGACTTAGACTGTCAAGCTCAGCCAAGCAGAGTCACACAAGTGGGGAGATTGTCAACTACATGGCAGTTGATGTTCAGAGGGTAGGGGACTACTCTTGGTACCTTCATGACATGTGGATGCTTCCTATGCAGATTGTTCTTGCCCTTTTAATTTTGTATAAGAATGTTGGAATTGCTTCTGTTGCAACATTGATTGCTACAATCATTTCCATTGTTGTCACTGTTCCTGTGGCTAGGGTGCAAGAAGATTATCAGGACAAATTGATGGCAGCTAAGGATGAAAGGATGAGAAAGACATCAGAGTGTCTTAGGAATATGAGGATTCTCAAGCTGCAAGCTTGGGAGGACCGATATCGATTGAAGTTGGAGGAAATGCGTGGAGTAGAGTTCAAGTGGCTAAGGAAAGCACTCTATTCTCAGGCTTGCATAACTTTCATGTTCTGGAGCTCCCCTATATTTGTTTCAGCTGTTACTTTTGCTACTTCCATATTGTTGGGGGGTCAGTTGACAGCAGGTGGTGTTCTCTCTGCTCTAGCTACTTTCAGGATTCTCCAAGAACCTCTGAGGAATTTTCCTGACTTGGTATCAACCATGGCTCAGACAAAAGTTTCTCTTGATCGCATATCTGCTTTCCTGCAGGATGAAGAATTGCAGGAAGATGCGACTATCGTCTTGCCACCTGGCATTTCTAACACGGCCATAGAAATTATGGATGGTGTCTTCTGCTGGGACTCTTCTTTGCCAAGGCCTACTCTATCGGGAATACATGTGAAAGTGGAAAGAGGGATGACTGTGGCTGTTTGTGGCATGGTTGGTTCCGGTAAATCAAGTTTTCTTTCTTGCATCCTTGGAGAGATTCCCAAGCTGTCTGGTGAAGTAAAAGTGTGTGGTTCTGTTGCATATGTCTCCCAATCTGCTTGGATACAGTCAGGAAATATAGAAGAAAATATCCTGTTTGGCACCCCAATGGACAAAGCAAAGTACAAGAATGTTCTTCATGCTTGCTCATTGAAAAAGGACCTAGAACTTTTCTCACATGGAGACCAAACAATTATTGGTGACAGAGGTATAAATTTGAGTGGTGGTCAGAAGCAGCGGGTTCAGCTTGCTCGAGCACTCTACCAAGATGCTGATATTTACCTACTTGATGATCCCTTCAGTGCAGTTGATGCCCACACTGGATCAGAATTATTTAGGGAGTATGTATTGACAGCACTAGCAGATAAAACAGTCATTTTTGTGACCCATCAAGTTGAATTTCTTCCTGCTGCTGATATGATAATGGTTCTTAAAGAAGGCCACATCATACAGGCAGGAAAATATGATGATCTTTTACAAGCAGGAACAGATTTTAAAACTCTAGTTTCAGCTCACCATGAAGCAATAGAGGCTATGGATATTCCTAATCACTCAGAAGATTCAGATGAAAATGTACCCTTGGATGACACTATTATGACCAGTAAGACATCCATTTCTTCTGCAAATGATATTGAGAGTTTGGCTAAGGAAGTTCAGGAGGGATCATCAGATCAGAAAGTAATTAAGGAGAAGAAGAAAGCAAAACGCTCGAGAAAAAAACAGCTTGTTCAGGAAGAGGAGAGGGTTAGAGGTAGAGTCAGCATGAAGGTGTACTTGTCATACATGGCTGCAGCATACAAAGGTGTATTGATTCCACTCATAATCATTGCACAAACATTATTTCAGTTCCTTCAGATTGCCAGTAATTGGTGGATGGCTTGGGCAAATCCTCAAACTAAGGGAGACCAACCCAAAGTAACTCCCACAGTTCTTCTTCTTGTTTACATGGCCCTTGCTTTTGGCAGCTCATGGTTCATCTTTGTAAGGGCTGTTCTCGTGGCTACATTTGGTCTAGCAGCTGCACAGAAACTATTTTTTAACATGCTTAGAAGCATATTCCATTCACCAATGTCTTTCTTTGACTCTACACCAGCTGGAAGGATCTTGAATCGTGTTTCAATTGATCAAAGTGTTGTGGATCTTGATATTCCTTTTAGACTTGGAGGGTTTGCTTCATCAACAATACAACTTATTGGCATTGTTGCTGTAATGACAGATGTTACATGGCAAGTTTTGCTCCTAGTAGTCCCGTTGGCTATTATTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAATTAGTACGTATCGTGAGCATCCAAAAATCTCCAATTATACATCTTTTTGGTGAATCAATTGCTGGAGCAGCCACCATTAGAGGTTTTGGACAAGAAAAAAGGTTCATGAAGAGGAACCTCTATCTTCTGGATTGTTTTGCACGACCATTCTTCTGTAGTCTTGCAGCTATTGAGTGGCTCTGCCTGCGCATGGAATTACTTTCAACCTTTGTATTTGCTTTCTGCCTGGTATTACTTGTCAGCCTTCCCCATGGAAGTATTGATCCCAGCATGGCTGGACTTGCAGTAACATATGGCCTGAATTTAAATGCACGTCTATCACGATGGATACTTAGCTTTTGCAAACTTGAAAATAAAATCATATCCATTGAAAGAATTTATCAATACAGCCAAATTCCTAGTGAAGCACCAGCAATTGTTGAAGATTCTCGTCCTCCATCCTCATGGCCTGAGAATGGGACAATCCAATTAATTGATCTGAAGGTACGTTACAAGGAAAATCTTCCCGTGGTGCTTCACGGAGTATCCTGCACATTTCCTGGTGGGAAGAAGATTGGAATAGTTGGTCGTACTGGCAGTGGCAAATCTACCTTGATTCAAGCATTATTTCGATTGGTTGAACCGGAGGCAGGGAGTATCCTTATAGACAACATTAATATTTCATCAATTGGTCTTCATGATCTTAGAAGTCATTTGAGTATCATACCACAAGATCCAACCTTATTTGAAGGCACCATTCGAAGCAATCTTGATCCTCTTGATGAGCACTCTGATAAAGAGATTTGGGAGGCCCTTGATAAGTCACAACTTGGAGATATAATCCGTGAGACAGAGCGAAAGCTTGATATGCCAGTGCTGGAGAATGGAGATAATTGGAGTGTAGGACAGTGTCAACTTGTTTCTTTGGGTCGAGCTCTGCTGAAGCAATCAAAGATACTTGTACTTGATGAAGCAACGGCATCGGTTGATACTGCTACTGATAATCTTATCCAGAAGATTATTCGAAGAGAGTTTAGAGATTGCACTGTGTGCACTATTGCACATCGTATTCCTACTGTTATTGACAGTGATCTAGTGCTGGTACTCAGTGATGGTCGAGTTGCAGAGTTTGATAGTCCATCTAGGCTGTTAGAGGACAAGTCATCTATGTTTCTGAAGTTGGTGACGGAGTATTCATCGCGGTCAAGTGGCATACCAGACTTTTAA 4554 0.4275 MGVARFFHDVLGLPVLELATICMNLTFVLLFLFVVSVRRVLVYGGGFRFGKDGNSGNASPICSVIDEETRGVRIGVGFKLSVLSCFYVLFVNVLALGFEGGALIWGEANGDADVDLSLLAVPAAQGLAWFVLSFSALYCKFKVSERFPFLLRAWWFLSFVICLCTLYVDGRGFWEEGSEHLCSRAVANVAVTPALAFLCVVAIRGGTGIRVCGNSDLQEPLLVDEEPGCLKVTPYRDAGLFSLATLSWLNPLLSIGAKRPLELKDIPLVAPRDRAKTSYKVLNSNWERLKAENENPSKQPSLAWAILKSFWKDAALNAIFAGMNTLVSYVGPYMISYFVDYLGGKETFPHEGYILAGIFFVAKLVETVTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSSAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDMWMLPMQIVLALLILYKNVGIASVATLIATIISIVVTVPVARVQEDYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRLKLEEMRGVEFKWLRKALYSQACITFMFWSSPIFVSAVTFATSILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRISAFLQDEELQEDATIVLPPGISNTAIEIMDGVFCWDSSLPRPTLSGIHVKVERGMTVAVCGMVGSGKSSFLSCILGEIPKLSGEVKVCGSVAYVSQSAWIQSGNIEENILFGTPMDKAKYKNVLHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFREYVLTALADKTVIFVTHQVEFLPAADMIMVLKEGHIIQAGKYDDLLQAGTDFKTLVSAHHEAIEAMDIPNHSEDSDENVPLDDTIMTSKTSISSANDIESLAKEVQEGSSDQKVIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYKGVLIPLIIIAQTLFQFLQIASNWWMAWANPQTKGDQPKVTPTVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFFNMLRSIFHSPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASSTIQLIGIVAVMTDVTWQVLLLVVPLAIICLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCLVLLVSLPHGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPAIVEDSRPPSSWPENGTIQLIDLKVRYKENLPVVLHGVSCTFPGGKKIGIVGRTGSGKSTLIQALFRLVEPEAGSILIDNINISSIGLHDLRSHLSIIPQDPTLFEGTIRSNLDPLDEHSDKEIWEALDKSQLGDIIRETERKLDMPVLENGDNWSVGQCQLVSLGRALLKQSKILVLDEATASVDTATDNLIQKIIRREFRDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDSPSRLLEDKSSMFLKLVTEYSSRSSGIPDF* 1518
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0968 1517 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1271 1505 IPR003439 GO:0005524
Gso13g0968 1517 CDD ABCC_MRP_domain2 1269 1489 - -
Gso13g0968 1517 CDD ABC_6TM_ABCC_D1 316 603 IPR044746 GO:0140359
Gso13g0968 1517 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 629 852 IPR003439 GO:0005524
Gso13g0968 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 625 851 IPR027417 -
Gso13g0968 1517 SMART AAA_5 656 837 IPR003593 -
Gso13g0968 1517 SMART AAA_5 1297 1482 IPR003593 -
Gso13g0968 1517 CDD ABCC_MRP_domain1 629 828 - -
Gso13g0968 1517 ProSitePatterns ABC transporters family signature. 754 768 IPR017871 GO:0005524
Gso13g0968 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1262 1501 IPR027417 -
Gso13g0968 1517 Gene3D ABC transporter type 1, transmembrane domain 913 1252 IPR036640 GO:0005524|GO:0016021
Gso13g0968 1517 Gene3D ABC transporter type 1, transmembrane domain 282 612 IPR036640 GO:0005524|GO:0016021
Gso13g0968 1517 SUPERFAMILY ABC transporter transmembrane region 304 614 IPR036640 GO:0005524|GO:0016021
Gso13g0968 1517 Pfam ABC transporter transmembrane region 954 1198 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso13g0968 1517 Pfam ABC transporter transmembrane region 318 583 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso13g0968 1517 Gene3D - 1254 1507 IPR027417 -
Gso13g0968 1517 CDD ABC_6TM_ABCC_D2 952 1246 IPR044726 GO:0140359
Gso13g0968 1517 Pfam ABC transporter 1288 1436 IPR003439 GO:0005524
Gso13g0968 1517 Pfam ABC transporter 647 781 IPR003439 GO:0005524
Gso13g0968 1517 Gene3D - 623 857 IPR027417 -
Gso13g0968 1517 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 315 595 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso13g0968 1517 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 63 1517 - -
Gso13g0968 1517 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 63 1517 - -
Gso13g0968 1517 Coils Coil 909 929 - -
Gso13g0968 1517 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 954 1224 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso13g0968 1517 SUPERFAMILY ABC transporter transmembrane region 951 1251 IPR036640 GO:0005524|GO:0016021
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso13g0968 Gso-Chr13 24045506 24054534 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0968 639 845 Calmodulin-binding Proteins AT2G36910 31.718 5.54e-20 95.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0968 - - gmx:100781010 2945.22
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1406 19 42874581 42883287 Gso13g0968 13 24045506 24054534 PCT
Gso3g1412 3 40058442 40066812 Gso13g0968 13 24045506 24054534 PCT
Gso13g0968 13 24045506 24054534 Gso19g1406 19 42874581 42883287 PCT
Gso13g0968 13 24045506 24054534 Gso3g1412 3 40058442 40066812 PCT