Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0960 ATGGCGCCGACGCCGAGTCAAAAAGAAAGAGCACTTGCGGCCTGTCGTGCTATGTCAAGTCTTGGAATTGATGATTCGAAAGTGAAGTCGGTGTTAAAGAAACTCCTCAAAGTGTATGATAAAAATTGGGAACTTATTGAGGCAGAGAACTATAGAGTTTTAGCAGATGCTATATTTGAGGATGATGATAATATGGTGCCCGAATTGAAAAAGAAAAGCCAGACAGCTGATGTGCATAACACTGGTCATTCTATGTCGTCTTCTTTTCAAAACAACCAGGAAGCAGAGACAGGGTGTGAAGAGGCTCAGATGCATGTTGAAACACCCCAACCTTTGAAAAGGTTGCGTTTACAAGGCCAGGAGAGTCAGCCTTTGCATCCTCCCACTAACGGTTCCCCCAGCCCTCCATCAAAAAAACTTAAATTAGACGATAATGCATCTGGGAAGAAGCCTCAAAACAAACCAGTGTCTTCTGATGGGAATCCAGGGATTGCAACTCGTCCACTTCCACCACGAGATGGCATTGTTGATAAGGGGAAACAACCTGCATCACTCCCTCTTAATCACAGAGGAAGAAGACTTCCATCTGAAAGAGTGCCCCAATCTATACCGTCTAGAGAACCAACAGTTGAACCTGGGAGGTTTCTATTGCCAAACAACCAAATGCCCCGTACTCAGACACTGGTCATACCCAAGGATGAGCCTATTGATGAATTGACTGATTACGAGATGCCCATTGCAGTGATTCCCCCTGAATCAAGTGTAAGGAACTCGTCAATTAAGAATGGTGTAGCTGGAAAACATAGTGGTCATGTTACTGTGACATCATCACAAAACAGAGATGGAGTTGGAGATGAAGATGTTATTCCCACCTCAAAGAAAGAAGCGACTTGTAATGTAGAGATAGCCTCATCAACTCTTGGAGAGGTAAAACTTTCTTTGAGCTACGGCTCAGCTCTTCAGGGATCAGATTTTCATATGCCTAGTCGAGATCAACTTATAAAAGTGATGGAGGATAAATGTCTGCGATCATATAAAATCACTGACCCAAATTTCTCTGTCAAGAATCTGTTGAGAGATATATGTGATTGCATGTTGGAATTCAGAAATGACTCAAATGATGACTCACAAGAAGGTTCTGTGATAAGTTCCAGTGTTGATGTGTCAAAGGAACCACGGGCACCTGGCACACTGAGTGTGGTAGGAAATAAAGATTTGGACACGTCTTCTCACTTTTCAAACGGATCCATCAATGTTAAGTCTTCTGATGACTTGGTTTCTCCCGGAAGTATCCTTCCTCTAGCCCACCCGAATGGTCTGAGTGATGCTGTACCGGTTTCCAAGATGGACAGAACGAATGATTTTTTGCAAAGTAATGTCAAAAAGGATCTGGAAGATCCTATGTCTCCAAATTCACATAGTTTAGTGGTTGTTCCACAGCATCAGCTTACAGCTGATGATATAAGGTCTTTTCATGATGCTAATGACCTTACAAAAGGAGAAGAAAATGTTGAAATTCCATGGGTGAACGAAACTACTAATGATTTTGCACCATCGTTTAACTACATACCCCAAAACCTTGTGTTCCAAGAGGCTTATGTTAACATTTCTCTATCACGTATTGGCAGTGAGGACTGTTGTTCAACTTGTATGGGCAATTGTGTCTTGTCTTCATCCTGTGCTTGTGCAAATAAAACTGGGGGTGAATTTGCATACAATGCTCAAGGCCTACTGAAGGAAGAATTCTTGGAAGAGTGTATTGCCATCAGTCGCAATCCTCAGCAACATTTATTCTATTGCAAAAATTGCCCTCTTGAAAGATCTAAAAGTGATGGTTGTTTAGAACCGTGTAAGGGACACTTAAAGAGGAAGTTTATTAAAGAATGTTGGAGCAAATGTGGCTGTGGGAAGCAGTGTGGCAATCGGGTTATCCAGCGAGGAATAACTTGCCATTTGCAGGTATTTTTTACTTCAGAAGGAAAAGGATGGGGTCTTCGCACCTTAGAGGACCTGCCAAAAGGTGCATTTGTGTGCGAGTTTGTTGGAGAAATTTTATCCATGAAAGAGTTGCATGAGAGGAACTTGAAATGCACTGAAAATGGGAAATATACATGCCCAGTTTTACTGGATGCTAATTGGGATTCAGGATATGTGAAGGACGAAGAAGCTCTATGCTTAGATGCAGCTTCCTTTGGCAACACTGCCAGGTTTATCAATCACAGATGTTCTGATGCAAACTTGATTGAAATCCCAGTCGAAGTTGAGGATCCTGGTCATTATTACTATCATTTTGCCTTTTTCACTTCCAGAAAAATATCAGCACAGGAAGAGCTAACATGGGACTATGGCATTGACTTTGATGACCACGATCATCCTGTCCAGCTGTTCCAGTGCAGATGTGGCAGTAAATTCTGCAGGAACATGAAGAGATATAGCAGATCTCTTAGATATGCGTCAATTGCAGGATGA 2469 0.4208 MAPTPSQKERALAACRAMSSLGIDDSKVKSVLKKLLKVYDKNWELIEAENYRVLADAIFEDDDNMVPELKKKSQTADVHNTGHSMSSSFQNNQEAETGCEEAQMHVETPQPLKRLRLQGQESQPLHPPTNGSPSPPSKKLKLDDNASGKKPQNKPVSSDGNPGIATRPLPPRDGIVDKGKQPASLPLNHRGRRLPSERVPQSIPSREPTVEPGRFLLPNNQMPRTQTLVIPKDEPIDELTDYEMPIAVIPPESSVRNSSIKNGVAGKHSGHVTVTSSQNRDGVGDEDVIPTSKKEATCNVEIASSTLGEVKLSLSYGSALQGSDFHMPSRDQLIKVMEDKCLRSYKITDPNFSVKNLLRDICDCMLEFRNDSNDDSQEGSVISSSVDVSKEPRAPGTLSVVGNKDLDTSSHFSNGSINVKSSDDLVSPGSILPLAHPNGLSDAVPVSKMDRTNDFLQSNVKKDLEDPMSPNSHSLVVVPQHQLTADDIRSFHDANDLTKGEENVEIPWVNETTNDFAPSFNYIPQNLVFQEAYVNISLSRIGSEDCCSTCMGNCVLSSSCACANKTGGEFAYNAQGLLKEEFLEECIAISRNPQQHLFYCKNCPLERSKSDGCLEPCKGHLKRKFIKECWSKCGCGKQCGNRVIQRGITCHLQVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILSMKELHERNLKCTENGKYTCPVLLDANWDSGYVKDEEALCLDAASFGNTARFINHRCSDANLIEIPVEVEDPGHYYYHFAFFTSRKISAQEELTWDYGIDFDDHDHPVQLFQCRCGSKFCRNMKRYSRSLRYASIAG* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0960 822 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 2 310 - -
Gso13g0960 822 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 378 819 - -
Gso13g0960 822 SMART preset_2 494 634 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso13g0960 822 Pfam Pre-SET motif 498 642 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso13g0960 822 ProSiteProfiles Pre-SET domain profile. 546 647 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso13g0960 822 ProSiteProfiles SET domain profile. 650 783 IPR001214 GO:0005515
Gso13g0960 822 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 378 819 - -
Gso13g0960 822 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 2 310 - -
Gso13g0960 822 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 822 IPR025776 -
Gso13g0960 822 MobiDBLite consensus disorder prediction 78 98 - -
Gso13g0960 822 Gene3D - 2 64 IPR043017 -
Gso13g0960 822 Pfam SET domain 662 783 IPR001214 GO:0005515
Gso13g0960 822 MobiDBLite consensus disorder prediction 263 282 - -
Gso13g0960 822 MobiDBLite consensus disorder prediction 373 402 - -
Gso13g0960 822 MobiDBLite consensus disorder prediction 263 289 - -
Gso13g0960 822 SUPERFAMILY SET domain 489 789 IPR046341 -
Gso13g0960 822 SMART set_7 650 789 IPR001214 GO:0005515
Gso13g0960 822 MobiDBLite consensus disorder prediction 71 103 - -
Gso13g0960 822 MobiDBLite consensus disorder prediction 120 219 - -
Gso13g0960 822 Gene3D SET domain 480 793 IPR046341 -
Gso13g0960 822 Pfam Ubiquitin-binding WIYLD domain 6 64 IPR018848 GO:0018024
Gso13g0960 822 CDD SET_SETDB-like 518 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0960 Gso-Chr13 23984959 23992029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0960 496 806 Su(var)3-9 homologs AT1G73100 30.631 1.70e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso13g0960 Pre-SET 6.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0960 - - gmx:100778335 1665.2