Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0947 ATGGAGCATGTGATTGGTGGCAAGTTTAAACTGGGAAGGAAAATTGGGAGTGGGTCTTTTGGGGAGCTCTATTTAGGTGTTAATGTACAAACTGGAGAGGAGGTAGCTGTTAAGCTGGAACCTGTGAAGACCAGGCATCCACAGCTTCACTATGAGTCAAAACTGTATATGCTTCTTCAAGGAGGAACGGGGATTCCCCACCTCAAGTGGTTTGGAGTTGAGGGAGACTACAATGTCATGGTTATCGACCTTCTTGGACCAAGTCTGGAAGATTTATTCAACTATTGTGACCGGAAGTTCACATTGAAGACAGTGTTAATGCTTGCTGATCAATTGATTAACAGAGTTGAATATATGCATTCAAGAGGTTTCCTTCACCGTGACATAAAGCCGGACAATTTTCTAATGGGTCTAGGACGAAAAGCAAACCAAGTGTATGCCATTGACTATGGCCTTGCAAAAAAATATAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCACGCTATGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTATTTCTTAAAAGGAAGTCTTCCCTGGCAAGGACTGAGGGCTGGCACCAAAAAACAAAAATATGACAAAATCAGTGAGACAAAGGTGTCAACTTCCATAGAGGTGCTCTGCAAATCATATCCCTCTGAGTTTGTGTCATACTTCCAATATTGCCGATCACTGCAATTTGAGGACAAGCCAGATTATTCGTATTTAAAGAGACTTTTCCGAGACCTATTTATTCGAGAAGGCTACCAGTTTGATTACATTTTTGACTGGACTATGTTAAAATATCCACAGATCAGTGGCAGCTCCAGAGGGCGGCATGGCACTGGCAAGGCAGCTATGCATGCAGGTCCACATGTACAAAAAGCAGAAAAGATCTCAGTTGGGAAAGAGATTCGAGAGAAATTCTCTGGTGCAGTTGAAGCGTTCTCCCGGAGGAACCCTGCAAATGCTAGTCCTCGTGGTGATCACACCAAACACAGGAGTTTTGAGGATGTACCAGTGCAAAAGGATTTGCACTATGCGCAACACAATTCCACTCGATATGGCAGCAGTTCAAGAAGAGCCATGATCTCATCAAACAAGCCAATATCCTCAGGTGACCATACTGGCAGGCAAACCATAACTGGGAGCCGTCCATCTGGTGCTCACAGAATTCAACCTGTGTATGACACCAAACAAGCAACTTATACACGCGGTGGCTCTATAAGAGGCCACCGTGATGATCCTCTGCGGAACTTCGAGCTCCTCAATATCAGGAAGTAA 1362 0.442 MEHVIGGKFKLGRKIGSGSFGELYLGVNVQTGEEVAVKLEPVKTRHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCDRKFTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYAIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLKGSLPWQGLRAGTKKQKYDKISETKVSTSIEVLCKSYPSEFVSYFQYCRSLQFEDKPDYSYLKRLFRDLFIREGYQFDYIFDWTMLKYPQISGSSRGRHGTGKAAMHAGPHVQKAEKISVGKEIREKFSGAVEAFSRRNPANASPRGDHTKHRSFEDVPVQKDLHYAQHNSTRYGSSSRRAMISSNKPISSGDHTGRQTITGSRPSGAHRIQPVYDTKQATYTRGGSIRGHRDDPLRNFELLNIRK* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0947 453 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0947 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gso13g0947 453 MobiDBLite consensus disorder prediction 372 413 - -
Gso13g0947 453 Gene3D Transferase(Phosphotransferase) domain 1 1 336 - -
Gso13g0947 453 PANTHER CASEIN KINASE-RELATED 1 441 - -
Gso13g0947 453 MobiDBLite consensus disorder prediction 301 321 - -
Gso13g0947 453 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0947 453 MobiDBLite consensus disorder prediction 351 370 - -
Gso13g0947 453 MobiDBLite consensus disorder prediction 341 418 - -
Gso13g0947 453 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Gso13g0947 453 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 441 - -
Gso13g0947 453 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0947 453 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gso13g0947 453 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0947 Gso-Chr13 23846449 23854757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0947 8 213 MAP Kinase Kinase Kinase AT3G06030 25.463 2.80e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gso13g0947 Pkinase 6.8e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0947 K08960 - gmx:100789031 925.235