Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0946 ATGATGAATGTGGGATTTGAGGTGATTCATGCAAATTATAATCCAAACATGATTCATCCACACATGCATGAAACATGGGATCACTACTCAAATACCATTACTTCCTTGCCATTTTCTGCTCCAACCCCATCAAACCCTTATCCAAAGCCAGCAACAGAAAACAACCATTGCCTTAACTTGGGGCAGAATGAACTCTGTGATTGGATGGAAGAACACATTAGTGACATCACCAAACACTTTGTTGAAGACTTACCAGAAACAACCACTTCTGATAACTTGCTTTCTAATAACCCAACAGGGGTTGTTTCCCATCACAACCTTGGTGTTCCCTCACTACTTTCACCCAACTTCACCCAAAGAAAACCCTCATGTTTTAGACCCCAGTTTGAGTCCTTCACCAACGATCCCCCAAACTTCAATCTTCACATTCAAACAAACACCTCAACTTTAGATCAAAACAAACACAATGTTTATGATCAAGGGTTGAACCTAATAACCCTTTTAATGGAGTGTGCAGTGGCAATCTCAGTTGACAACCTAGGTGAGGCTCATAGGATGTTACTAGAGCTAACACAAATGGCCTCACCATACAAAGCATCATGTGCTGAACGTGTTGTTGCTTACTTTGCAAAAGCCATGACTAGCAGGGTGATGAATTCATGGCTTGGAGTGTGTTCCCCTTTGGTTGATCACAAAAGCATAAACTCAGCATTCCAAGTGTTCAACAACATTTCCCCTTTCATCAAATTTGCTCACTTCACTTCCAACCAAGCAATTCTAGAAGCAGTGAGTCATTGTGACAGCATTCACATCATTGACTTGGACATCATGCAAGGGCTTCAATGGCCGGCTTTTTTCCACATCTTAGCCACAAGAATGGAGGGTAAACCAAAAGTCACAATGACAGGTTTGGGAGCCTCAATGGAACTCCTTGTTGAAACAGGAAAACAACTCACAAACTTTGCAAGAAGGCTTGGCTTGTCACTGAAGTTTCACCCCATTGCAACAAAGTTTGGGGAAGTAATTGATGTGTCCATGCTTCATGTGAAGCCTGGTGAGGCAGTGGCAGTGCACTGGCTGCAGCATTCACTGTATGATGCAACTGGACCAGATTGGAAAACACTGAGACTCCTTGAGGAGTTGGAGCCAAGAATCATCACCTTGGTGGAGCAAGATGTAAACCATGGAGGGTCTTTCTTGGACCGTTTTGTTGCCTCCTTGCACTACTACTCCACCCTCTTTGATTCCCTTGGAGCATACTTACACAATGATGATTCAAACCGGCACCGTGTGGAGCATGGCCTTCTCTCCAGGGAGATCAACAATGTGTTGGCCATAGGAGGACCTAAGAGGAGTGGTGAAGACAATTTTAGGCAGTGGAGAAGTGAGCTTGCTAGGCACTGTTTTGTGAAGCAGGTTCCATTGAGTGACAATTCAATGGCTCAAGCACAATTGATATTGAACATGTTTTCACCTGCTTATGGGTATAGCCTTGCGCAAGTTGAGGGAACTTTAAGGCTTGGATGGAAGGATACAAGCTTGTACACAGCTTCTGCATGGACCTGCTGTAATTCTAGCTAG 1581 0.4383 MMNVGFEVIHANYNPNMIHPHMHETWDHYSNTITSLPFSAPTPSNPYPKPATENNHCLNLGQNELCDWMEEHISDITKHFVEDLPETTTSDNLLSNNPTGVVSHHNLGVPSLLSPNFTQRKPSCFRPQFESFTNDPPNFNLHIQTNTSTLDQNKHNVYDQGLNLITLLMECAVAISVDNLGEAHRMLLELTQMASPYKASCAERVVAYFAKAMTSRVMNSWLGVCSPLVDHKSINSAFQVFNNISPFIKFAHFTSNQAILEAVSHCDSIHIIDLDIMQGLQWPAFFHILATRMEGKPKVTMTGLGASMELLVETGKQLTNFARRLGLSLKFHPIATKFGEVIDVSMLHVKPGEAVAVHWLQHSLYDATGPDWKTLRLLEELEPRIITLVEQDVNHGGSFLDRFVASLHYYSTLFDSLGAYLHNDDSNRHRVEHGLLSREINNVLAIGGPKRSGEDNFRQWRSELARHCFVKQVPLSDNSMAQAQLILNMFSPAYGYSLAQVEGTLRLGWKDTSLYTASAWTCCNSS* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0946 526 Pfam GRAS domain family 164 521 IPR005202 -
Gso13g0946 526 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 26 522 IPR005202 -
Gso13g0946 526 ProSiteProfiles GRAS family profile. 155 521 IPR005202 -
Gso13g0946 526 PANTHER OS05G0485400 PROTEIN 26 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0946 Gso-Chr13 23840047 23842016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0946 127 521 GRAS Transcription Factor Family AT3G54220 53.676 3.90e-137 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso13g0946 GRAS 6.4e-104 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0946 - - gmx:100775656 1081.63