Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0943 ATGGAGGAAGAGGAGGATCGAATTTTGCTCTCTAGTTTGGGTGTAAAGTCTGCCAATCCCGAAGACATCGAGCGCGACGTTTTGGAAAAGGCTACTAGGAATGATTTAGTGACCGTTACTGAAGTCGAAGGTAGCGCCAAGGAAGAGCGTTCTGATTTACCTGAAAATGTTGATCCATCGGCTAATGATAAAGCTGAACTTCGTCAGAAGTTGAGAGCTGTTCAATTTGAAATTGACGCGGTTGCCTCCGCCGTTGAACGGTTGAGTAATGTTGAAGATAATGAAGAATGTAGTGATGCTGGTGAGGACAGCCCAGGGCGAGGGACCGCCGAGGGTGAGTCCGATGGCAATTCGAACCTTCAGCGTGCTCTTGCTGCCGATAGGCTGAGGAGCCTGGAGAAGACGAAAGCTCAACTAGAGAAAGAGCTTTTGGATTTGTTCAAGGATGATGACTCCAAAAGTGCTGAGCATGAAGAATTGGTCCTTAGTTTAGTTAAGGAAGAACGGAAATCAAAGAGAAAGGTTAAAGAGGATAAAAAATTGAACAAAAGTGCAGGAAAGCGGCCTAAGAAAGTCTCGTTTGATGACGATGCTGATTTTGATGCTGTTCTGGATGCAGCCTCTGCAGGCTTTGTTGAAACAGAAAGGGATGAACTGGTGAGAAAAGGAATTTTAACTCCTTTTCATAAGTTGGAGGGCTTCGAGCGCCGCTTTCAACAACCTGAAACATCAACTAGTCATAATGCAGCTGAGGAAGAAAATGACAGTGACCTCGCTTCTGCCAGTATTGAAAGAGCTGCCAGATCCATGTCTGAGGCAGCAAGATCTCGCCCAACCACCAAGTTACTTGAGCCTGAAGCTGCACCAAAGCTTGATGCGCCCACTATTCCTTTTCGCAGGCTCAAGAAACCACTAAAATCTTCCAAACCTCTAGATGTGGAGCTGAATAAAGATTCAAAAAGGAAAAAGAGGCGGCCTCTGCCTGGTAGGAAATGGACCAAGCGTGTTTCTTGTGAGGATTCACATCCGGAAGAAAGTGAAAACACGAATGGTTGCTTGGATTCTTCAAGTTGTGAAAATTTAGAAGAACAAGATGTTGAACTTGATGATCAGGAATCTTCTTATGTAACATTAGAAGGTGGGCTGAAAATCCCTGATAACATATTTGAAGCTCTGTTTGACTATCAAAAGGTCGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGCGATGAGATGGGGCTTGGTAAAACTGTTCAGGTCTTGTCATTTCTTGGTGCATTGCATTTTAGTGGCATGTACAAACCCAGCATTATTGTCTGTCCCGTTACACTCTTGCGACAGTGGAAAAGGGAAGCTAAAAAGTGGTACCCAAAATTCCATGTAGAGCTTTTACATGATTCTGCTCAAGATTCTGCTCCAAGAAAGAAGCGAGCTAAATCTGAAGAAACAGACTATGAAAGCAATAGTAAAAGTGATAGTGATTATGAGAAAAGTGTGGCATCTAAAAGTACAAGAAAATGGGAATCCCTGATAAATCGTGTCATGAGATCAGAATCTGGATTACTTATCACCACTTATGAGCAGCTCAGAATATTGGGGGAGCAGCTGCTTGACATTCAATGGGGTTATGCAGTTCTTGATGAAGGGCATAGAATAAGGAATCCAAATGCTGAAGTTACCCTTGTTTGCAAACAGCTACAGACTGTACACCGCATTATAATGACTGGTGCACCTATTCAGAACAAACTGACAGAACTGTGGTCATTGTTTGATTTTGTTTTCCCTGGAAAATTGGGTGTTTTGCCTGTATTTGAAGCTGAATTTTCTGTTCCTATATCAGTTGGTGGATATGCAAATGCTTCACCATTGCAAGTATCCACAGCATACAGGTGTGCTGTGGTGCTGCGCGATTTAATCATGCCTTACCTTCTACGACGAATGAAGGCTGATGTGAATGCCCAACTTCCAAAGAAAACTGAGCATGTTCTATTTTGCAGCCTTACATCAGAGCAAGTATCTGCTTATAGAGCATTTTTAGCTAGCACTGATGTGGAGCAAATATTGGATGGACACAGGAACTCTCTTTATGGAATTGATGTGATGCGCAAGATCTGCAACCACCCTGATCTGCTTGAAAGGGATCATGCCTTCAATGATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTTAATGTTTGGAAGGAACAGGGTCACCGTGTTCTCCTTTTTACTCAAACCCAACAAATGCTTAACATTTTTGAGAATTTTTTGACTACTTCTGGTCACATTTATCGGAGAATGGATGGTCTCACTCCTGTAAAACAGAGAATGGCTTTAATAGATGAATTTAATGATTCAAGTGAAATATTTATTTTCATTTTAACAACCAAAGTTGGGGGGTTGGGGACGAATCTTACAGGTGCAAATAGGGTGATCATCTTCGACCCTGACTGGAATCCTTCAACTGATATGCAGGCTAGAGAGCGTGCATGGCGTATTGGTCAGAAGCGGGATGTGACAGTGTATAGGTTGATCACGCGTGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACCAATAAGATATTGAAGAACCCACAGCAGAAAAGGTTCTTTAAAGCCCGGGATATGAAAGATCTTTTCACACTTAATGTGGATGGAGAAACTGGGTCAACTGAAACGTCAAATATTTTCAGTCAAATATCTGAAGAAGTCAATGTCATTGGGACATATAAAGAAAATAAGGATAAGTATAAACATAGCCAAACTGCTGAACTGGTTTCTGAAGATGTTGCAGTTGGTAATGATGACAAATCAGAGAGAGGGTCTTTGAGAGGAAAGGGGAAAGAGAAGGTTGAACACGAACATAGTAAAGGGGTTGGTGAAGAAACAAATATATTGAAAAGCCTTTTTGATGCCAATGGGATACATAGTGCCATGAACCATGATTTGATCATGAATGCCCATGATGAGGAGAAGATTAGACTTGAGGAGCAAGCATCCCAGGTTGCACAAAGAGCTGCAGAAGCTTTACGTCAGTCACGAATGCTCCGAAGCCATGATAGCGTATCTGTTCCGACATGGACAGGAAGGTCAGGAACTGCTGGTGCACCATCGTCTGTCAAGCGGAAGTTTGGATCAACTGTGAATCCCCAGTTGGTAAATAATAGCAAAGCATCTGACGAATTACCCAACAAGGGAACTAACAAGATCAATGGATTTGCTGCTGCTGGGGCATCTGCTGGTAAAGCATTATCTTCAGCCGAACTATTGGCTCAAATTCGAGGTAACCAAGAGAAAGCCATTGGTGCTGGGCTTGAACATCAGTTTGGTGTGTCGTCAAGTTCCACTAATCAACCAAGATCTGGAGATGTTAGATCTTCCAGGGCTACTGAAAATTCATCTGTACAACCTGAAGTATTGATTCGGAAAATCTGTACTTTTATACAACAGCGAGGTGGCAGTTCCGATTCAGCCAGCATAGTTCAGTATTTCAAGGACCGTATTCCCTCGAAAGATCTTGCGCTGTTCAAGAATCTTTTAAAGGAAATTGCGACTCTGCATAAAGGATCAAATGGATCCTATTGGGTTCTGAAACCAGACTATCAATTCTGA 3678 0.4244 MEEEEDRILLSSLGVKSANPEDIERDVLEKATRNDLVTVTEVEGSAKEERSDLPENVDPSANDKAELRQKLRAVQFEIDAVASAVERLSNVEDNEECSDAGEDSPGRGTAEGESDGNSNLQRALAADRLRSLEKTKAQLEKELLDLFKDDDSKSAEHEELVLSLVKEERKSKRKVKEDKKLNKSAGKRPKKVSFDDDADFDAVLDAASAGFVETERDELVRKGILTPFHKLEGFERRFQQPETSTSHNAAEEENDSDLASASIERAARSMSEAARSRPTTKLLEPEAAPKLDAPTIPFRRLKKPLKSSKPLDVELNKDSKRKKRRPLPGRKWTKRVSCEDSHPEESENTNGCLDSSSCENLEEQDVELDDQESSYVTLEGGLKIPDNIFEALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQVLSFLGALHFSGMYKPSIIVCPVTLLRQWKREAKKWYPKFHVELLHDSAQDSAPRKKRAKSEETDYESNSKSDSDYEKSVASKSTRKWESLINRVMRSESGLLITTYEQLRILGEQLLDIQWGYAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTSEQVSAYRAFLASTDVEQILDGHRNSLYGIDVMRKICNHPDLLERDHAFNDPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLNIFENFLTTSGHIYRRMDGLTPVKQRMALIDEFNDSSEIFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLNVDGETGSTETSNIFSQISEEVNVIGTYKENKDKYKHSQTAELVSEDVAVGNDDKSERGSLRGKGKEKVEHEHSKGVGEETNILKSLFDANGIHSAMNHDLIMNAHDEEKIRLEEQASQVAQRAAEALRQSRMLRSHDSVSVPTWTGRSGTAGAPSSVKRKFGSTVNPQLVNNSKASDELPNKGTNKINGFAAAGASAGKALSSAELLAQIRGNQEKAIGAGLEHQFGVSSSSTNQPRSGDVRSSRATENSSVQPEVLIRKICTFIQQRGGSSDSASIVQYFKDRIPSKDLALFKNLLKEIATLHKGSNGSYWVLKPDYQF* 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0943 1225 CDD SF2_C_SNF 735 860 - -
Gso13g0943 1225 MobiDBLite consensus disorder prediction 305 321 - -
Gso13g0943 1225 SMART ultradead3 388 620 IPR014001 -
Gso13g0943 1225 MobiDBLite consensus disorder prediction 1038 1066 - -
Gso13g0943 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 655 919 IPR027417 -
Gso13g0943 1225 MobiDBLite consensus disorder prediction 168 192 - -
Gso13g0943 1225 MobiDBLite consensus disorder prediction 332 347 - -
Gso13g0943 1225 MobiDBLite consensus disorder prediction 89 109 - -
Gso13g0943 1225 Coils Coil 1007 1034 - -
Gso13g0943 1225 MobiDBLite consensus disorder prediction 26 64 - -
Gso13g0943 1225 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 740 899 IPR001650 -
Gso13g0943 1225 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 250 1121 - -
Gso13g0943 1225 Gene3D - 659 951 IPR027417 -
Gso13g0943 1225 MobiDBLite consensus disorder prediction 235 356 - -
Gso13g0943 1225 MobiDBLite consensus disorder prediction 954 981 - -
Gso13g0943 1225 MobiDBLite consensus disorder prediction 1036 1066 - -
Gso13g0943 1225 CDD DEXHc_ERCC6 392 602 - -
Gso13g0943 1225 MobiDBLite consensus disorder prediction 42 64 - -
Gso13g0943 1225 Pfam SNF2-related domain 395 717 IPR000330 GO:0005524|GO:0140658
Gso13g0943 1225 Gene3D - 359 652 IPR038718 -
Gso13g0943 1225 MobiDBLite consensus disorder prediction 1129 1154 - -
Gso13g0943 1225 Coils Coil 122 149 - -
Gso13g0943 1225 MobiDBLite consensus disorder prediction 1130 1154 - -
Gso13g0943 1225 SMART helicmild6 766 849 IPR001650 -
Gso13g0943 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 653 IPR027417 -
Gso13g0943 1225 PANTHER SNF2/RAD54 FAMILY MEMBER 250 1121 - -
Gso13g0943 1225 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 404 603 IPR014001 -
Gso13g0943 1225 MobiDBLite consensus disorder prediction 87 119 - -
Gso13g0943 1225 MobiDBLite consensus disorder prediction 477 504 - -
Gso13g0943 1225 Pfam Helicase conserved C-terminal domain 742 849 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0943 Gso-Chr13 23807198 23814424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0943 364 902 RAD5 or RAD16-like Gene Family AT1G02670 22.439 9.64e-24 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso13g0943 SNF2_N 4e-61 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0943 K10841 - gmx:100820025 2326.59