Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0939 ATGGGTCTTAGAGACATTGGTGCTTCACTGCCCCCAGGGTTTCGGTTTTACCCGAGTGATGAGGAGTTGGTCCTTCATTACCTTTATAAAAAGATCACTAATGAGGAAGTTCTGAAGGGTACCTTGATGGAAATTGATTTACACACGTGCGAGCCATGGCAACTCCCTGAGGTGGCTAAGCTTAATGCAAACGAATGGTACTTCTTCAGCTTCCGTGACCGTAAATATGCAACTGGATTTCGGACCAATCGTGCGACGACATCTGGCTATTGGAAAGCAACGGGGAAGGATCGTACGGTGCTTGACCCTGCCACGCGTGAGGTTGTAGGGATGAGGAAGACATTGGTGTTCTACAGGAACAGGGCTCCAAATGGTATCAAAACGGGTTGGATCATGCATGAGTTTCGCTTGGAGACGCCACATACGCCCCCTAAGGAGGACTGGGTTTTGTGTAGAGTGTTTCACAAAGGCAAAGCAGACAACAGTGCCAAACTCATCATGTACGAGAGCACAGTTCCATCCCTAACTTTGGCTTCGTCATCTCCAACCAACCAAAACACCACACCATCAATTGGGTATAACCAATTACTTGCCCCATTCTCTTCCTCAATGGCAACCCATCATCATCATCATCATCATATTCCAAACCAAAGCCAAAACAACAACTCCTTGATGAGTCTCCTTCAGTTCTCTAGGGAAACAAACACCAACAACTCTAGCACCGTTACTCAAATTAGTCCCAAATGTGATGATAATGGATATGGGTTCTTATGGGACATGGACCTCGAAGAAAATAGCTTCCATGATGGCGGGGCATCAAACTTGGATGGAATGAGATTCGAGGTTGATAATAATAATAGTGTGGTGTTGTTATGA 876 0.4566 MGLRDIGASLPPGFRFYPSDEELVLHYLYKKITNEEVLKGTLMEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDPATREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHTPPKEDWVLCRVFHKGKADNSAKLIMYESTVPSLTLASSSPTNQNTTPSIGYNQLLAPFSSSMATHHHHHHHIPNQSQNNNSLMSLLQFSRETNTNNSSTVTQISPKCDDNGYGFLWDMDLEENSFHDGGASNLDGMRFEVDNNNSVVLL* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0939 291 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Gso13g0939 291 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 285 - -
Gso13g0939 291 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 285 - -
Gso13g0939 291 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
Gso13g0939 291 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Gso13g0939 291 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0939 Gso-Chr13 23756407 23761466 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0939 6 249 NAC Transcription Factor Family AT1G56010 44.094 2.71e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso13g0939 NAM 7.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0939 - - gmx:100783645 542.732