Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0921 ATGGATTTTGATTCATCTTTCTTCCAATACCAAAACTTTAACTCTTCCTTTGTAAATTCCTCTGTTTGTGCAGAACCATTCTCTTGGGAGAACTTTCTTTTCTTCAATGAAGAAAACACCACCACCACCACCCTTAATTCCTTCACCATCACTGACCACTCCTCACAATCACGAATCAAGGAATCATCATCCTCAGATTATTCCAACTCTTCGGGCTCCTTGGTCAGCACTGAGTCACAACTAGAAGTCTCATCCAATTTAACTCATGCAAGCCATCAACTCGAAACACATGCATCACCACAACCACCAAAAGAAGGTAACAAAGACAAGAGACCCTTCAGAGGAGTGAGGAGAAGGCCATGGGGAAAATTTGCTGCTGAAATAAGAGACTCCACAAGAAATGGGGTCAGAGTTTGGATTGGCACATTTGACACAGCTGAAGCAGCAGCACTGGCTTATGACCAAGCTGCTTTGTCCACAAGAGGGTCCATGGCAGTGCTGAATTTCCCAGAAGAAGTGGTGAGGGAATCACTCAAAGACATGCAGAACAATAATAAGCCATCATTGGAAGATGGTTCCTCTCCAGTGTTGGCACTCAAGAGAAAACACACCATGAGGAGAAAATCCAAAGCCACTAACAAAAAAACCAAAAGGGGTCATGGAATGGAGTTAGAAAATATTGTGCTTTCACAAAATGTGCTGGTCTTGGAGGACTTGGGTTCTGAGTACTTGGAGCAACTTCTCAGCTTGACTTCTTCTGATGATGATTTCCTTTGCTAG 780 0.4321 MDFDSSFFQYQNFNSSFVNSSVCAEPFSWENFLFFNEENTTTTTLNSFTITDHSSQSRIKESSSSDYSNSSGSLVSTESQLEVSSNLTHASHQLETHASPQPPKEGNKDKRPFRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALSTRGSMAVLNFPEEVVRESLKDMQNNNKPSLEDGSSPVLALKRKHTMRRKSKATNKKTKRGHGMELENIVLSQNVLVLEDLGSEYLEQLLSLTSSDDDFLC* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0921 259 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Gso13g0921 259 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 252 - -
Gso13g0921 259 PANTHER DNA-BINDING DOMAIN 4 252 IPR044808 GO:0003700|GO:0009873
Gso13g0921 259 SMART rav1_2 112 176 IPR001471 GO:0003700|GO:0006355
Gso13g0921 259 CDD AP2 113 171 IPR001471 GO:0003700|GO:0006355
Gso13g0921 259 MobiDBLite consensus disorder prediction 85 116 - -
Gso13g0921 259 MobiDBLite consensus disorder prediction 85 100 - -
Gso13g0921 259 ProSiteProfiles AP2/ERF domain profile. 112 170 IPR001471 GO:0003700|GO:0006355
Gso13g0921 259 Gene3D AP2/ERF domain 112 172 IPR036955 GO:0003700|GO:0006355
Gso13g0921 259 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Gso13g0921 259 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Gso13g0921 259 SUPERFAMILY DNA-binding domain 113 171 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0921 Gso-Chr13 23577908 23579087 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0921 108 248 AP2-EREBP Transcription Factor Family AT3G23240 62.411 1.18e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso13g0921 AP2 2.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0921 K14516 - gmx:100784784 422.935