Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0919 ATGGAGGGTGGAAGATCATCTGTTTCAAATGGGAATTGTGAGGTTCGGTATAGAGGGATTAGAAGAAGGCCATGGGGCAAGTTTGCAGCAGAGATTCGTGACCCTACGAGAAAAGGGACAAGGATATGGCTTGGAACATTTGACACTGCGGAACAAGCTGCTCGAGCTTATGATGCTGCTGCTTTTCATTTTCGTGGTCATAGAGCAATTCTCAACTTCCCAAATGAGTACCAATCTCATAATCCAAACTCTTCTTTGCCTATGCCTCTAATTGTGCCTCCTCTTTCTTATTCTTCTTCTTCTTCTTTCACTTCTAATTATTCTGGTGATGATAATAACCACCTTGTGAGACCTGGAGAAATAATGCAAGGTGGTGATCTTGATGACACTTTTGAGTTGGAGTACTTGGATAATAAGTTGCTCGAGGAACTCCTTCAGATGCAAGATAACAGACACTTCTACAAGTGA 468 0.4209 MEGGRSSVSNGNCEVRYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFDTAEQAARAYDAAAFHFRGHRAILNFPNEYQSHNPNSSLPMPLIVPPLSYSSSSSFTSNYSGDDNNHLVRPGEIMQGGDLDDTFELEYLDNKLLEELLQMQDNRHFYK* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0919 155 PANTHER DNA-BINDING DOMAIN 12 146 IPR044808 GO:0003700|GO:0009873
Gso13g0919 155 PANTHER - 12 146 - -
Gso13g0919 155 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Gso13g0919 155 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
Gso13g0919 155 CDD AP2 16 75 IPR001471 GO:0003700|GO:0006355
Gso13g0919 155 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Gso13g0919 155 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Gso13g0919 155 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
Gso13g0919 155 Pfam AP2 domain 16 67 IPR001471 GO:0003700|GO:0006355
Gso13g0919 155 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0919 Gso-Chr13 23564741 23565577 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0919 12 152 AP2-EREBP Transcription Factor Family AT3G23230 51.773 1.50e-38 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso13g0919 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0919 - - gsj:114381985 306.605