Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0918 ATGACTTCCCCTTTCTTTGACCCCATCCACGATTCTCTTTCCTTCGACATGGTTGATAATTTCTCCATGGCACCAACAGAAGGAAACCATGGCAAGGCAAAGCAATTGGTGGTGAAATCTGAAGCGCAGAATAATAAGGAAAGGTCTTACATTGGTGTGAGGAAAAGGCCTTGGGGGAAAGTCGCAGCAGAGATCAGAGATACAACGAGGAACGGCGCAAGGGTTTGGCTTGGAACCTTTGACAGTATTGAGGCTGCTGCATTAGCTTATGATCAAGCTGCATTTACCATGAGAGGTGATCATGCTGTGCTCAATTTTCCGGTGAAGACGGTGAAAAAGTCTTTGCAAGAGATTCAATATAGCTGCTGCAATGGTTCTTCTCCTGCACTTGCACTCAAGGAGAGGCACTGCATTCAAAGAAAGTTGTCATCAAAAGCTAAAATGTGTAGAGGGAAAGAGACATCATCATCAGAGGATTCAACACAAAGTGTGGTGGTGTTTGAGGACTTGGGAGTTGACTATCTTGAGCATCTTCTTAGCGTATCAGATCAAAGTGAAAGTACAAGCCCTAGCTACTTCAACTAA 585 0.4427 MTSPFFDPIHDSLSFDMVDNFSMAPTEGNHGKAKQLVVKSEAQNNKERSYIGVRKRPWGKVAAEIRDTTRNGARVWLGTFDSIEAAALAYDQAAFTMRGDHAVLNFPVKTVKKSLQEIQYSCCNGSSPALALKERHCIQRKLSSKAKMCRGKETSSSEDSTQSVVVFEDLGVDYLEHLLSVSDQSESTSPSYFN* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0918 194 Gene3D AP2/ERF domain 49 109 IPR036955 GO:0003700|GO:0006355
Gso13g0918 194 CDD AP2 50 108 IPR001471 GO:0003700|GO:0006355
Gso13g0918 194 SMART rav1_2 49 113 IPR001471 GO:0003700|GO:0006355
Gso13g0918 194 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Gso13g0918 194 PRINTS Ethylene responsive element binding protein signature 89 109 IPR001471 GO:0003700|GO:0006355
Gso13g0918 194 Pfam AP2 domain 50 99 IPR001471 GO:0003700|GO:0006355
Gso13g0918 194 PANTHER DNA-BINDING DOMAIN 13 181 IPR044808 GO:0003700|GO:0009873
Gso13g0918 194 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677
Gso13g0918 194 PANTHER AP2 DOMAIN CONTAINING PROTEIN, EXPRESSED 13 181 - -
Gso13g0918 194 ProSiteProfiles AP2/ERF domain profile. 49 107 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0918 Gso-Chr13 23544289 23545104 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0918 33 185 AP2-EREBP Transcription Factor Family AT3G23240 52.903 1.06e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso13g0918 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0918 K14516 - gmx:100812569 389.037