Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0917 ATGCCTAGTATGTCTTCCCCTTTCTTCCAGAACCCGGATTGGAACATGTCGCAGGACCCTTACGAAATTTTGTTCGATTCGTTGCCAAGAAATGATGTTCTTGACCCTCTTCACGATTCTCTTTCCTTCGATATGGTTGATAATTTCTCCATGGCACCAAAAGGAAACCATAGCAAGGCAAATCAAGTGGTGGTGAAATCTGAAGTGCAGAATAAGGAAAGGTCGTACACAGGTGTAAGGAAAAGGCCTTGGGGAAAATATGCAGCAGAGATCAGAGACACGACGAGGAATGGCACTAGGGTTTGGCTTGGAACCTTTGACACTGCAGAGGCTGCTGCTTTGGCTTATGACCAAGCTGCATTTTCCATGAGAGGCCATAATGCTGTGCTCAATTTTCCGATCAAAAGGGTCAAAGATTCTTTGCAAGAGATCCAATATAGCTGTTGCAATGGTTCTTCTCCTGCACTTGCACTCAAGGAGAGGCACTGCATCCAAAGAAAGTTCTCATCAAAAGCTAAAAAGTGTAAAGGGAAAGGGACATCAGAGGATCCAACACAAAGTGTGGTGGTGTTAGAGGACTTGGGAGTTGACTATCTTGAGCAACTTCTAAGCGTTTCTGATCAAAGTGAAAGCCCTAGCTATTGGCCCTAG 651 0.4485 MPSMSSPFFQNPDWNMSQDPYEILFDSLPRNDVLDPLHDSLSFDMVDNFSMAPKGNHSKANQVVVKSEVQNKERSYTGVRKRPWGKYAAEIRDTTRNGTRVWLGTFDTAEAAALAYDQAAFSMRGHNAVLNFPIKRVKDSLQEIQYSCCNGSSPALALKERHCIQRKFSSKAKKCKGKGTSEDPTQSVVVLEDLGVDYLEQLLSVSDQSESPSYWP* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0917 216 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B-LIKE 52 210 - -
Gso13g0917 216 Pfam AP2 domain 76 126 IPR001471 GO:0003700|GO:0006355
Gso13g0917 216 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Gso13g0917 216 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Gso13g0917 216 ProSiteProfiles AP2/ERF domain profile. 75 133 IPR001471 GO:0003700|GO:0006355
Gso13g0917 216 CDD AP2 76 134 IPR001471 GO:0003700|GO:0006355
Gso13g0917 216 PANTHER DNA-BINDING DOMAIN 52 210 IPR044808 GO:0003700|GO:0009873
Gso13g0917 216 Gene3D AP2/ERF domain 75 135 IPR036955 GO:0003700|GO:0006355
Gso13g0917 216 SMART rav1_2 75 139 IPR001471 GO:0003700|GO:0006355
Gso13g0917 216 SUPERFAMILY DNA-binding domain 76 134 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0917 Gso-Chr13 23512356 23513155 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0917 73 209 AP2-EREBP Transcription Factor Family AT3G23240 57.664 1.65e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso13g0917 AP2 5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0917 K14516 - gmx:100812017 426.402