Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0916 ATGACTCCCCCTTTCTTCCAGAACCCAGCTGCAGATTGGAACATGTTGCAGCAGGAGCCTTCAGAAATTTTGTTCGATTCAATGTCAAGCAATAATGCTGTTCTTGACCCTATCCAAGATTCTCTTTCCTTTGATATGGTTGACTTCTCCACAACACCAACAGAAGGAAACCATAACGAGGCAAAGAAATTGGTGGTGAAATCTGAACTGCAGAATAATAAGGAAAGGTCTTACATTGGTGTGAGGAAAAGGCCTTGGGGAAAATTCGCAGCAGAGATCAGAGACACAACGAGGAACGGTGCGAGGGTTTGGCTTGGAACCTTTGACAGTGCTGAGGCTGCTGCATTAGCTTATGACCAAGCTGCATTTACCATGAGAGGTGATAATGCTGTGCTCAATTTTCCGGTGAAGACGGTGAAAGAGTCTTTGCAAGAGATTCAATATAGCTGCTGCAATGGTTCTTCTCCTGCACTTGCACTCAAGGAGAGGCACTGTATCCAAAGAAAGTTGTCATTAAAGGGTAGAAAGTGTAAAGCGAAAGAGACATCATCATCAGAGGATCCAACACCAAGTGTGTTGGTGTTCGAGGACTTGGGAGCTGACTATCTTGAGCAACTTCTAAGCATATCTGATCAAAGTGCAAGACCTAGCTACTTCAGCTAA 663 0.4434 MTPPFFQNPAADWNMLQQEPSEILFDSMSSNNAVLDPIQDSLSFDMVDFSTTPTEGNHNEAKKLVVKSELQNNKERSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFDSAEAAALAYDQAAFTMRGDNAVLNFPVKTVKESLQEIQYSCCNGSSPALALKERHCIQRKLSLKGRKCKAKETSSSEDPTPSVLVFEDLGADYLEQLLSISDQSARPSYFS* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0916 220 Pfam AP2 domain 78 127 IPR001471 GO:0003700|GO:0006355
Gso13g0916 220 SMART rav1_2 77 141 IPR001471 GO:0003700|GO:0006355
Gso13g0916 220 CDD AP2 78 136 IPR001471 GO:0003700|GO:0006355
Gso13g0916 220 PANTHER DNA-BINDING DOMAIN 44 209 IPR044808 GO:0003700|GO:0009873
Gso13g0916 220 ProSiteProfiles AP2/ERF domain profile. 77 135 IPR001471 GO:0003700|GO:0006355
Gso13g0916 220 SUPERFAMILY DNA-binding domain 78 136 IPR016177 GO:0003677
Gso13g0916 220 Gene3D AP2/ERF domain 77 137 IPR036955 GO:0003700|GO:0006355
Gso13g0916 220 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Gso13g0916 220 PRINTS Ethylene responsive element binding protein signature 101 117 IPR001471 GO:0003700|GO:0006355
Gso13g0916 220 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 44 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0916 Gso-Chr13 23498312 23498982 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0916 44 214 AP2-EREBP Transcription Factor Family AT3G23240 50.292 6.91e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso13g0916 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0916 K14516 - gmx:100811486 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2094 19 49492593 49493568 Gso13g0916 13 23498312 23498982 PCT
Gso13g0916 13 23498312 23498982 Gso3g1365 3 39576659 39577707 PCT