Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0915 ATGCCTACTAATTCCCCTTTGTTTCATCAGAATCCAGATTGGAACATGTTGCAGGAGCCTTCAGAAATTTTGTTCGATTCATTCTCAAGCAATCCTGTTCGAGACACCGTCCACGATTTACTTTCCTTCGACATGGTTGACTTCTCCACGCCACCAACAGAAGGAAATCACAACAAGACAAAGCAATTGGTGGTGAAGTCTGAAGTGCAGAATAAGGAAAGGTCATACATAGGTGTGAGGAAAAGGCCTTGGGGAAAATTTGCAGCAGAGATCAGAGACACAACGAGGAATGGCACTAGGGTTTGGCTTGGAACCTTTGAGAGTGCAGAGGCTGCTGCATTGGCTTATGATCAAGCTGCATTTTCCATGAGAGGCCACGATGCTGTGCTCAATTTTCCGGTCAAAAGGGTCAAAGAGTCTTTGCTAGAGATTCAATATGGTTGCAGCAAAGGGTGTTCACCAGCTCTTGCTATCAAGGAGAGGCACTACATCAGACGAAAATTGTCATCAAAAGCTAGAAAGTGTAGAGAGAATAAACAGGAATCAGAGGCACCAACACCAAGTGTGGTTGTGTTAGAGGACTTGGGAGTTGAATATCTAGAGCAACTTCTAAGCATATCGGATCAAAGTGTAAGCTTATAA 642 0.4393 MPTNSPLFHQNPDWNMLQEPSEILFDSFSSNPVRDTVHDLLSFDMVDFSTPPTEGNHNKTKQLVVKSEVQNKERSYIGVRKRPWGKFAAEIRDTTRNGTRVWLGTFESAEAAALAYDQAAFSMRGHDAVLNFPVKRVKESLLEIQYGCSKGCSPALAIKERHYIRRKLSSKARKCRENKQESEAPTPSVVVLEDLGVEYLEQLLSISDQSVSL* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0915 213 ProSiteProfiles AP2/ERF domain profile. 75 133 IPR001471 GO:0003700|GO:0006355
Gso13g0915 213 SMART rav1_2 75 139 IPR001471 GO:0003700|GO:0006355
Gso13g0915 213 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Gso13g0915 213 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Gso13g0915 213 Gene3D AP2/ERF domain 75 135 IPR036955 GO:0003700|GO:0006355
Gso13g0915 213 Pfam AP2 domain 76 126 IPR001471 GO:0003700|GO:0006355
Gso13g0915 213 CDD AP2 76 134 IPR001471 GO:0003700|GO:0006355
Gso13g0915 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 54 206 - -
Gso13g0915 213 PANTHER DNA-BINDING DOMAIN 54 206 IPR044808 GO:0003700|GO:0009873
Gso13g0915 213 SUPERFAMILY DNA-binding domain 76 134 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0915 Gso-Chr13 23485066 23486442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0915 38 210 AP2-EREBP Transcription Factor Family AT3G23240 52.874 3.22e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso13g0915 AP2 3.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0915 K14516 - gmx:100527364 421.009