Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0914 ATGGAAGAGGAGTCAAAGGAGAAAAAGAAGGACACTAAGGAGGAACCACGTTATAGAGGAGTGCGGCGGCGGCCGTGGGGGAAGTTCGCGGCCGAGATTCGGGACCCGGCCCGGCACGGTGCCCGAGTGTGGCTGGGGACATTTCTCACGGCGGAGGAGGCTGCTAGGGCTTATGACCGAGCTGCCTATGAGATGAGGGGCGCTTTAGCCGTTCTCAATTTTCCAAATGAGTATCCTTCATGCTCTTCTATGAACTCATCTTCAACATTAGCACCTTCATCTTCTTCTTCAAATTCAATGCTTAAAAGTGATCATGGTAAACAAGTTATTGAGTTCGAGTGCTTGGATGACAAATTGTTAGAGGACCTTCTTGATTGTGATGACTATGCCTACGAGAAAGACTTGCCTAAGAACTGA 417 0.4916 MEEESKEKKKDTKEEPRYRGVRRRPWGKFAAEIRDPARHGARVWLGTFLTAEEAARAYDRAAYEMRGALAVLNFPNEYPSCSSMNSSSTLAPSSSSSNSMLKSDHGKQVIEFECLDDKLLEDLLDCDDYAYEKDLPKN* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0914 138 PANTHER ETHYLENE RESPONSE FACTOR 1 128 - -
Gso13g0914 138 Gene3D AP2/ERF domain 17 76 IPR036955 GO:0003700|GO:0006355
Gso13g0914 138 CDD AP2 16 76 IPR001471 GO:0003700|GO:0006355
Gso13g0914 138 MobiDBLite consensus disorder prediction 80 102 - -
Gso13g0914 138 PANTHER DNA-BINDING DOMAIN 1 128 IPR044808 GO:0003700|GO:0009873
Gso13g0914 138 MobiDBLite consensus disorder prediction 1 21 - -
Gso13g0914 138 ProSiteProfiles AP2/ERF domain profile. 17 75 IPR001471 GO:0003700|GO:0006355
Gso13g0914 138 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Gso13g0914 138 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Gso13g0914 138 Pfam AP2 domain 16 67 IPR001471 GO:0003700|GO:0006355
Gso13g0914 138 SMART rav1_2 17 81 IPR001471 GO:0003700|GO:0006355
Gso13g0914 138 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0914 Gso-Chr13 23475562 23476265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0914 14 128 AP2-EREBP Transcription Factor Family AT3G23230 58.537 2.38e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso13g0914 AP2 4.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0914 - - gmx:100810414 216.083