Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0910 ATGAACAAATCCTCAGATGCAGCAGCGTCTCCATATTGCAGAGGCAGGTCCAAGAAACCCAATCTCCGAAGCTCCAAATCCCAACCCCCAAGCCACGTTGAGTTCAGCTCCAAGACGCCGGAGAAGCCGCCGCAGCGAATCCGCAACCGCGGCGTAGCGCTCTCCGTCGCCGACATCAGAAAGGCCGCCTGCAAGCGCTTGCAAGATCAGAAGCAATGCACTGAAACGACGTCGTCATCGTTGTCGTCGTCGTCGTCGCTCAGCAAAAGTGTCAGGAGGCAGATCTCACTGGGGCCTTCTTCTCCCAGTAAACCCATGGCTACTGAAGATGAATCCTCTAATCTTCCCGAAAAATATGAAATTTTGGATGAGTTCTTCAATCGCTTGGATACTTTGGTTTCACTGCACCGTCTGAAACGGTGGACTCCAACCTTTACTTCATTCAGTTCACGGATTGAATCTTTAACTGACAGGAGGTTTACTCACAGTCATCTAGCCCAGTTGAAATTTATCTTGCGTAAGGCTATTGTTCTTAGGAAGCATCTAGTGCTTGATGAACGGACGAGTTGTATGAAGCCGGATATTCACATTTCTTTAGACCCAGATGCGGTGGAGGCTGACGCTGCCAAGTTGCCCCCACAAGGTGGAAGAGTGTCGCTGAAGAAGGTGTTTCGGGCACGGTTAAAAGAATTTTGGGAATCTCATCCTGAGGGTGATGAAATTCCAGAAGGGACATTGCCTGAGCCATTCAATCGCCAAAAGAAAGACAGTGTTGTGGACATGTTGGAAACTCCCCTACCAACAAAATTGCCACCCTGCATGCGCTATAGTGACATTGTCAATAATGCAGACTTAGATGAAAAATTGTATGTACCTGTCAATGCAACAGTTGAATTCCCTAATGAGCATCTGGCAGCACCTTCTCACATGGCTCCATCCTTTAGAGCAGATGATGTACAGCAAAATCCTCTGTTAGATTCATTGCAGCCCCTGGCTTTTCCAGTTTCAGAGTCAAGCCAGAAGGAAAATCCACCCTTGGTGGATACTGAATCTCACCTGAAAACTTCCCCAGCTAAGTTTTCTTCAGAAGCATCTAGTAGTGAAAGTTGTCTAACAATTTGTGCTTCTCTGGAATCATCCAGTCCTCACCCTGCTACTCCAAGCAAAACCATTGAGTACACAGAAAAAAAAGATGGGTCTCTCAAGAGCATTGATGCCATGTCAACACCAACAAGCAGAACAAACAAGTATACAGAAAACAAAGATGGGTCTCTCGAGAGCATTGATGCCACTTCAACTCCAGCTAAACTGGTTTCTACCCCAATTAGGTTGATGAGTGCCACACCTGCCTTGCGGTCACCCAAAAGACGTTATATGAGCCCAGATGACCACTCTATCAGTTCTTTGAACAAGTTGGCTCGGCATCCATCTCGCTCAAGGTCATTGAAATTCGACACTCCAGTGAAGAATAAAGATGATATTTCTGACACCCTCCAAGAAGAATTTATCCAATCGATTAGAGAAAAGGAAAGACTGGCAATGGAGGAAAGAGACCCAGCTATCACACAAGCAAAGAAAAGAAAGAAGAATATAGCTAGCATCCCTAAGCTCTTTGACATGATTCGTGGGTTGCTTCGACAGCGGAATTGTATCACTAAAGCAGAGCTTGTAAGCAAGATAATCTCAACCCGGTGTGATATTGCTGACAGAAGTGAAGTTGAAGAGCAGCTAAATTTGTTGCAAGAACTAGCACCAGAATGGATTTATGAGAAGCATGTCTATAGTGGGGATTTGCTATTATTCATAAATAAAATGTTGAGCCCTGAAACCGTTCGAGCATCTCTTGAAGAAGCAACATAG 1860 0.4543 MNKSSDAAASPYCRGRSKKPNLRSSKSQPPSHVEFSSKTPEKPPQRIRNRGVALSVADIRKAACKRLQDQKQCTETTSSSLSSSSSLSKSVRRQISLGPSSPSKPMATEDESSNLPEKYEILDEFFNRLDTLVSLHRLKRWTPTFTSFSSRIESLTDRRFTHSHLAQLKFILRKAIVLRKHLVLDERTSCMKPDIHISLDPDAVEADAAKLPPQGGRVSLKKVFRARLKEFWESHPEGDEIPEGTLPEPFNRQKKDSVVDMLETPLPTKLPPCMRYSDIVNNADLDEKLYVPVNATVEFPNEHLAAPSHMAPSFRADDVQQNPLLDSLQPLAFPVSESSQKENPPLVDTESHLKTSPAKFSSEASSSESCLTICASLESSSPHPATPSKTIEYTEKKDGSLKSIDAMSTPTSRTNKYTENKDGSLESIDATSTPAKLVSTPIRLMSATPALRSPKRRYMSPDDHSISSLNKLARHPSRSRSLKFDTPVKNKDDISDTLQEEFIQSIREKERLAMEERDPAITQAKKRKKNIASIPKLFDMIRGLLRQRNCITKAELVSKIISTRCDIADRSEVEEQLNLLQELAPEWIYEKHVYSGDLLLFINKMLSPETVRASLEEAT* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0910 619 MobiDBLite consensus disorder prediction 403 427 - -
Gso13g0910 619 CDD Cdt1_c 502 616 IPR032054 -
Gso13g0910 619 SUPERFAMILY "Winged helix" DNA-binding domain 112 250 IPR036390 -
Gso13g0910 619 MobiDBLite consensus disorder prediction 69 110 - -
Gso13g0910 619 PANTHER DNA REPLICATION FACTOR CDT1 24 619 IPR045173 GO:0003677|GO:0030174|GO:0071163
Gso13g0910 619 CDD Cdt1_m 99 269 IPR014939 -
Gso13g0910 619 MobiDBLite consensus disorder prediction 454 488 - -
Gso13g0910 619 Pfam DNA replication factor Cdt1 C-terminal domain 503 592 IPR032054 -
Gso13g0910 619 Pfam DNA replication factor CDT1 like 115 208 IPR014939 -
Gso13g0910 619 MobiDBLite consensus disorder prediction 335 361 - -
Gso13g0910 619 MobiDBLite consensus disorder prediction 1 53 - -
Gso13g0910 619 MobiDBLite consensus disorder prediction 67 114 - -
Gso13g0910 619 Gene3D - 490 619 IPR038090 -
Gso13g0910 619 MobiDBLite consensus disorder prediction 404 418 - -
Gso13g0910 619 SMART CDT1_2 115 248 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0910 Gso-Chr13 23442947 23446460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0910 77 619 Core DNA Replication Machinery Family AT3G54710 31.900 3.34e-54 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0910 K10727 - gmx:100808801 1191.79