Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0904 ATGACTGGTTCAGGATCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGAAAATGTGTGAGAGGTTGTGTTTTTGCACCTTACTTTTGCCATGAGCAAGGTGCTACCCATTTTGCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTTCTTGCTCACCTTCCTGTGAGTGACCGTTGTGAAGCTGCAGTCACAATCTCATATGAAGCTCAAGCCAGACTTCAGGATCCAATTTATGGCTGTGTCTCCCATATTTTTGCACTCCAACAACAGGTGGTCAATTTACAAGCACAGCTAGCTTATCTCAAGGAACAAGCTGCTCAGAGTTGTCTCGATGGCTCTATCAATGAAAACCCTAGTGAAAAATTATTTGAAAAATCTTCTTCTGCTTTACCTCAAGATCTTCAAAGTTGGTTTAATCAGGTGGGAAATTCCAACCTGGGGCCAGAATTTCTTCCTAACATGTGTACTAATTTATCAACACAACATTATGGGAACAATGCCCTCATGGAAGATCTAAACCCTATTGGAATTAATTATGAAACTTCAGGAGCCATGGAAGGAAACAACTCCTCTAGCTTCGATGATAGTTCTAATAACTACTCCATGTCCTATGACATGCAAACAAACAGGAGGACATGGGGTTTTCATGAAGTGGAGGATCTACATTCAGTGGCTTTTGGATACGGAACTCGATCACATTCATGA 714 0.416 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQSCLDGSINENPSEKLFEKSSSALPQDLQSWFNQVGNSNLGPEFLPNMCTNLSTQHYGNNALMEDLNPIGINYETSGAMEGNNSSSFDDSSNNYSMSYDMQTNRRTWGFHEVEDLHSVAFGYGTRSHS* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0904 237 Coils Coil 87 107 - -
Gso13g0904 237 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Gso13g0904 237 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Gso13g0904 237 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 234 - -
Gso13g0904 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 1 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0904 Gso-Chr13 23370629 23372053 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0904 7 231 AS2 family AT3G58190 51.101 9.73e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso13g0904 LOB 5.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0904 K13945 - gmx:100805623 466.077