Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0903 ATGACTTCTGCAACTGGTAATGACACTGGCTCTGCAGGTTCTTCTTCTGGCTTTGGATCTCCCTGTGGGGCATGCAAGTTCCTAAGAAGAAAGTGTGCCGCTGATTGCATTTTTGCACCTTACTTTTGCTCAGAACAAGGAGCTGCTAGATTCGCTGCCATTCATAAGGTGTTCGGTGCTAGCAACGTTTCCAAGCTGCTCCTGCGTATACCAGCTCACCAACGTTTTGAGGCAATGCTCACACTTGCTTATGAAGCACAAGCTCGCGTCAGAGACCCTGTTTATGGTTGTGTCTCCCATATTTTCACCTTGCAACAACAGGTAGCATGCTTGCAGGCACAAGTAATGCAAATGAAGGCACAACTAGACCAGAACCAGATGGAGTCCAGGAACTTGGAGAATCATGGGTCAGATAATGTTATTAGACAACCATTCAATCCATTTTGTTTCACTTCCATGAATAACCCCACATCTCCTCAGAGCTCACTTGATTCAATTGATTATAGCAGCATCAATGATGGAATGAGCATGCGAGATGTACAAAGAAGAGAGGATTTCTCACTGCAAGCTTGTAATTTTAAGAAAAGATCTTATAACAATGACTTGGATGAGTTGCAAGAATTGGCACTCAGGATGATGAGGAACTGTGACTAG 654 0.4404 MTSATGNDTGSAGSSSGFGSPCGACKFLRRKCAADCIFAPYFCSEQGAARFAAIHKVFGASNVSKLLLRIPAHQRFEAMLTLAYEAQARVRDPVYGCVSHIFTLQQQVACLQAQVMQMKAQLDQNQMESRNLENHGSDNVIRQPFNPFCFTSMNNPTSPQSSLDSIDYSSINDGMSMRDVQRREDFSLQACNFKKRSYNNDLDELQELALRMMRNCD* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0903 217 Coils Coil 188 215 - -
Gso13g0903 217 Coils Coil 101 135 - -
Gso13g0903 217 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 13 214 - -
Gso13g0903 217 Pfam Lateral organ boundaries (LOB) domain 21 119 IPR004883 -
Gso13g0903 217 PANTHER LOB DOMAIN CONTAINING PROTEIN 13 214 - -
Gso13g0903 217 ProSiteProfiles LOB domain profile. 20 122 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0903 Gso-Chr13 23363565 23365674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0903 13 215 AS2 family AT2G42430 51.883 2.99e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso13g0903 LOB 2.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0903 K13944 - gmx:100776145 343.969