Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0901 ATGGAATTCGGCTACCAAGAAGATTCCTCCAAAAGCTCGAGCGACGAAATCGATCGATCGTCCGAACAGAATGATGAGACGGGCATTGGCAGATCCTACGAGTGTGTGTTTTGCAAGAGAGGCTTCACCACTGCACAGGCTTTGGGGGGACACATGAACATACACAGAAAAGATAGAGCCAATAACAAGGCCAAACCCAATTTTCCTCCTTCGAGTTCAAGCAAGGTTGTTGATGAGAGTAATAACTACGCAAATCCAAGCTATCTTACAAGAGGGAATTACTATTCTTCTACTCTTCCTGATCATAGGGAGGTAGATGTTAATTACAGTTACTACCATCAATTGTATTTTCCCTCACACGCATGTGGTGCCAAATCACCTTCACATGTACAATATAGTAGTGAGGTTTTGTGTGTAGAGAACCAAAGGGATCCTCATCTTCTGTTTGGACAAGATTGGAGGCAAAGGGGTTTGAGTTTGTACACTAATCCACTATGTGTATATGAAAATAAAGACAAGATAGAAAACAACAGTGAAGAGGATGATCTGGATTTAGAGCTTAGACTTGGTCATCATCCATAG 582 0.4192 MEFGYQEDSSKSSSDEIDRSSEQNDETGIGRSYECVFCKRGFTTAQALGGHMNIHRKDRANNKAKPNFPPSSSSKVVDESNNYANPSYLTRGNYYSSTLPDHREVDVNYSYYHQLYFPSHACGAKSPSHVQYSSEVLCVENQRDPHLLFGQDWRQRGLSLYTNPLCVYENKDKIENNSEEDDLDLELRLGHHP* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0901 193 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 5 193 - -
Gso13g0901 193 Pfam C2H2-type zinc finger 33 57 - -
Gso13g0901 193 SUPERFAMILY beta-beta-alpha zinc fingers 31 59 IPR036236 -
Gso13g0901 193 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Gso13g0901 193 MobiDBLite consensus disorder prediction 1 26 - -
Gso13g0901 193 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Gso13g0901 193 MobiDBLite consensus disorder prediction 65 81 - -
Gso13g0901 193 PANTHER OS07G0101800 PROTEIN 5 193 - -
Gso13g0901 193 MobiDBLite consensus disorder prediction 9 25 - -
Gso13g0901 193 MobiDBLite consensus disorder prediction 53 81 - -
Gso13g0901 193 Gene3D Classic Zinc Finger 7 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0901 Gso-Chr13 23329633 23331023 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0901 31 193 C2H2 Transcription Factor Family AT4G17810 31.515 7.24e-14 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso13g0901 zf-C2H2_6 1.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0901 - - gmx:102670484 389.037