Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0900 ATGGAAGGAAACTATCTGAACAGAAACAGTACTACTCCACAGAGAGAGGATAGCTTTGGTTTTGAGGAGCATTCATGGGGAACTCCATGGCCTGCTAGAAACTATGCTTGTAGCTTTTGCAAGAGAGAGTTTAGGTCTGCTCAAGCATTGGGTGGACACATGAATGTTCACAGAAGGGATAGGGCAAGATTGAGATCATCCTTATCTTCGTGGGTTTCCGAATGCCCTAAACCTAACCCTAATAATAACCCAACTCTTCTTCCACCACCCTCTTCTTCTTCACCATCTCCTTTGCCTGATGAGCCTTTGAACTATGCACATCCTTCTCCACTTTGTAGCCCTTGTCTCACTTTGTCTTCTTCACCCTCCCCAGCTTCTACCAGTGGAGACAAGAAACCAAGACTCACCCCTTCTCATCAATTTCCTCTTTTGATTCCTCAAAGCGAAATTAAGATGATGAGTATGAATACAAGGAGTGATTTCATTGCTGATGAGGAAATGAAGGGCTGTGTGGTGGAGGAGGAGGAGCACAAGGGTTTTAAGAATAATGAGCAAAACATTACGTTGGAGTTAGGAATAGGGTTGCTTAAACACCAAGAGGAGAAGTTAGATTTGGAGCTTCGCCTCGGGCATTAA 636 0.4418 MEGNYLNRNSTTPQREDSFGFEEHSWGTPWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSLSSWVSECPKPNPNNNPTLLPPPSSSSPSPLPDEPLNYAHPSPLCSPCLTLSSSPSPASTSGDKKPRLTPSHQFPLLIPQSEIKMMSMNTRSDFIADEEMKGCVVEEEEHKGFKNNEQNITLELGIGLLKHQEEKLDLELRLGH* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0900 211 Pfam C2H2-type zinc finger 35 59 - -
Gso13g0900 211 SMART c2h2final6 35 57 IPR013087 -
Gso13g0900 211 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 17 211 - -
Gso13g0900 211 MobiDBLite consensus disorder prediction 1 16 - -
Gso13g0900 211 MobiDBLite consensus disorder prediction 1 23 - -
Gso13g0900 211 MobiDBLite consensus disorder prediction 71 104 - -
Gso13g0900 211 MobiDBLite consensus disorder prediction 81 104 - -
Gso13g0900 211 Gene3D Classic Zinc Finger 22 77 - -
Gso13g0900 211 PANTHER OS07G0101800 PROTEIN 17 211 - -
Gso13g0900 211 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Gso13g0900 211 MobiDBLite consensus disorder prediction 116 134 - -
Gso13g0900 211 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Gso13g0900 211 MobiDBLite consensus disorder prediction 116 139 - -
Gso13g0900 211 SUPERFAMILY beta-beta-alpha zinc fingers 32 61 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0900 Gso-Chr13 23320955 23322137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0900 22 210 C2H2 Transcription Factor Family AT3G23130 39.267 9.74e-23 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso13g0900 zf-C2H2_6 5.7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0900 - - gmx:102662947 346.28