Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso13g0899 | ATGGGGATTCCAGAAAATATTGTTGTTGGTTCTCATGTTTGGGTTGGAGATCCAGAACTAGTTTGGATTGATGGACAGGTACTGAATATTAATGGTGAAGAAGCAGAAATTCAAACTAGTAATGAGAAGAAGGTTGTTTCCCGTTTGTCAAAATTATATCCCAAGGATATGGATGCGCCTACCGATGGGGTTGATGACATGACCAAGCTTGCTTATTTGCATGAGCCAGGAGTGCTGCATAATTTGGAAACCAGATACATGATGAATGAAATATATACTTATACTGGGAATATTCTCATTGCAATCAATCCCTTCCAAAGTCTTTCACACCTGTATGATACTAATGTGATGCAAAGATACAAGGGAGCAACGATTGGAGACTTGGACCCACATGTTTTTGCTATTGCTGAATCAGCATATAGGGCAATGATTAATGAGGAAAAAAGCAACTCAATTCTGGTTAGTGGTGAGAGTGGTGCTGGTAAGACAGAAACCACCAAAATGCTTATGCAGTACCTGGCATATTTGGGTGGTAACACTGCATCTGAAGGAAGAACTGTTGAAAAACAAGTTCTAGAATCAAATCCAGTTCTTGAAGCATTTGGTAATGCAAAAACTGTTAGAAATGACAATTCAAGCCGTTTTGGAAAATTTGTTGAGATTCAATTTAATAAGTATGGACGAATATCTGGTGCAGCCATTAGAACTTATCTGCTTGAGAAATCTCGTGTTTGCCAAATCTCAGCTCCTGAGCGTAACTATCATTGTTTCTACCTTCTTTGTGCTTCTCCTCCTGAGGAAAAGGAGAAATATAAGTTGGGAGATCCTAGATCATTTCACTACCTTAATCAATCCAATTGCTATGAATTAATTGGTGTAAATTCTGCTCAAGAGTATCTGAGCACCAAGAGAGCCATGGATATTGTGGGAATCAGTCAGGAGGAGCAGGATGCTATTTTCAGAGTTGTAGCTGCTATTCTTCATCTTGGAAACATTAAGTTTGCAAAATCAGAAGAAACTGATTCATCAGTTCTAGAAGATGAAGAATCCAAGTTTCATCTCCAAACAACAGCAGAACTTCTCATGTGTGATCCTAATTCTTTGGAAGGTGCACTCCGTGAGCGTGTGATGATTACTCCAGAAGAGATCATCAAAAGAAGTCTTGATCCTCTTGGTGCTACAGTTAGCAGGGATGGTTTAGCCAAAACACTATATTCTCGATTATTTGACTGGTTAGTCCAAAAAATTAATATCTCCATTGGGCAGGATCCTAGCTCAAAATGTCTCATTGGTGTTCTTGACATATATGGCTTTGAAAGCTTTCAAATGAATAGTTTTGAGCAGTTTTGTATAAATTTCACAAATGAAAAGCTGCAACAACACTTCAACCAGCATGTGTTTAAGATGGAGCAAGAGGAATACACGAAAGAAGGGATTGACTGGAGCTACTTAGAATTTGTAGATAATCAGGATGTACTGGATCTCATTGAAAAGAAACCAGGTGGAATCATTGCTCTGCTTGATGAAGCTTGTATGTTTCCTAAGTCAACTCACGAAACATTTTCACAGAAGCTTTATCAGACATTCAAAGATCACAAACGCTTCATCAAGCCAAAATTGACACGCTCAGATTTCACTGTTGTTCATTATGCAGGGGAGGTTCAGTATCAATCTGAGCAGTTTTTAGACAAGAACAAAGACTATGTTGTTCCTGAACATCAAGACATGCTAAGTGCTTCCAAATGTTCATTTGTATCTGGCCTTTTCCCTCCAATTTCTGAGGAGACAGCCAAATCTGCTAAGTTTTCTTCTATTGGTTCTCGTTTCAAGCTACAATTACAACAGTTGATGGATGCACTCAGTCTGACAGAGCCACACTATATTAGATGTGTAAAGCCAAATAGTCTATTAAAACCTTGCATATTTGAAAATATGAACGTTATCCAACAATTACGATCTGGTGGTGTTCTTGAAGCAGTAAGAATTAAATGTGCTGGATTCCCCACTCACTGGACCTTTCATGATTTCTTAACTCGATTAGGCATTCTTGCTCCGGAGGTTCTTCGGGGGAACTTCGAAGAAAAGGATTCATGTAAAAAGATTTTGGAGAAGATTGGGCTGGCAGGTTATCAGATAGGGAAAACACAAATATTCCTAAGAGCTGGTCAGATGGCTGAATTGGATGCTCAGAGAGCATTCCTGCTTAGTAGTTCTGCAACAGTTATCCAAAAGCATACTAAAACTCATTTTAGTCGGAAAAAATATATTGCATTGCAAAAGTCCTCTGTTTTTTTGCAATCCATTTGCAGAGGAGAACTGGCTCGAAGATCGTATTATCACATGAAGAGGGAAGCAGGTGCAGTCAGAATTCAAAAGTATATGCGTGGAACACTAGCCAGGAAATGGTACACCAAAATAAAGATCTCTGCCATTGTCTTGCAGACAGGTTTTCGAGCAGTGGCTGCTTGTAATAAATTTAGATATAGAAAGCAAATTAGTGCATCAACTACTATTCAGTCCTATTGGCGCCGACATAAAGCTCTCTATGACTATCAGAACCTTAGGAAAGCATCAATCAGTTCACAAAGCATCAATCACTCCAATGATAAACATGAACAGAAGGTTTTGGGGACACCTGTGCTAAATGAAAGTCCTTCTATGGAAGAATCTTCAAATCCTGTCCAAGAAGAATCATCAAGTCCTTTCCAAGATGATGAAAACATTGAAGCTATCAGGGATTCCTCTAGTCCTCTCAAAGACACTGAAAAGATTGAGGTTCTTACTGTAGAAATAAAAAACTTGAAGGTCATGTTGCAGGAAGAAAAACAAAGAGGTGATGAATATGAAAGGAAATATGTAGAAGCTCAAGGATCCAGCGAAGAGTTACGCAAAAAGTTAGCAGAAACTGAAAAAAGATTATATCAGCTTCAGGACTCGTTGAACAGGATGATATCTTCCATGTCAAGTCAAGTTGCCGAGCTGAAGACGATCTTGAGTACTTCATCAAGATTGAGTTCAACTTTTCGACCTATTGCTAGGGTTGACATTGCTTCCAGTAACTCTGATACTTCATCTACAGACTCTGATTTCACATTTCCAGCTCCTGTTTCGAATACCGAACCTTTGTCTTCCCCAGAGTCAAATTCTTTCCAACTAGTAGTTCAGGATGTCACTGCAGGGGATGGATCGGGATCTGAAAGTGGAAAGGAGGGTTCATTTGATGATTTCTTCTAG | 3234 | 0.3902 | MGIPENIVVGSHVWVGDPELVWIDGQVLNINGEEAEIQTSNEKKVVSRLSKLYPKDMDAPTDGVDDMTKLAYLHEPGVLHNLETRYMMNEIYTYTGNILIAINPFQSLSHLYDTNVMQRYKGATIGDLDPHVFAIAESAYRAMINEEKSNSILVSGESGAGKTETTKMLMQYLAYLGGNTASEGRTVEKQVLESNPVLEAFGNAKTVRNDNSSRFGKFVEIQFNKYGRISGAAIRTYLLEKSRVCQISAPERNYHCFYLLCASPPEEKEKYKLGDPRSFHYLNQSNCYELIGVNSAQEYLSTKRAMDIVGISQEEQDAIFRVVAAILHLGNIKFAKSEETDSSVLEDEESKFHLQTTAELLMCDPNSLEGALRERVMITPEEIIKRSLDPLGATVSRDGLAKTLYSRLFDWLVQKINISIGQDPSSKCLIGVLDIYGFESFQMNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEGIDWSYLEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLYQTFKDHKRFIKPKLTRSDFTVVHYAGEVQYQSEQFLDKNKDYVVPEHQDMLSASKCSFVSGLFPPISEETAKSAKFSSIGSRFKLQLQQLMDALSLTEPHYIRCVKPNSLLKPCIFENMNVIQQLRSGGVLEAVRIKCAGFPTHWTFHDFLTRLGILAPEVLRGNFEEKDSCKKILEKIGLAGYQIGKTQIFLRAGQMAELDAQRAFLLSSSATVIQKHTKTHFSRKKYIALQKSSVFLQSICRGELARRSYYHMKREAGAVRIQKYMRGTLARKWYTKIKISAIVLQTGFRAVAACNKFRYRKQISASTTIQSYWRRHKALYDYQNLRKASISSQSINHSNDKHEQKVLGTPVLNESPSMEESSNPVQEESSSPFQDDENIEAIRDSSSPLKDTEKIEVLTVEIKNLKVMLQEEKQRGDEYERKYVEAQGSSEELRKKLAETEKRLYQLQDSLNRMISSMSSQVAELKTILSTSSRLSSTFRPIARVDIASSNSDTSSTDSDFTFPAPVSNTEPLSSPESNSFQLVVQDVTAGDGSGSESGKEGSFDDFF* | 1078 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso13g0899 | 1077 | Gene3D | Kinesin motor domain | 65 | 662 | IPR036961 | - | |
| Gso13g0899 | 1077 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 8 | 57 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Gso13g0899 | 1077 | Gene3D | - | 252 | 310 | - | - | |
| Gso13g0899 | 1077 | CDD | MYSc_Myo11 | 76 | 720 | IPR036018 | - | |
| Gso13g0899 | 1077 | SMART | MYSc_2a | 56 | 733 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Gso13g0899 | 1077 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 788 | 859 | IPR027417 | - | |
| Gso13g0899 | 1077 | SMART | iq_5 | 782 | 804 | IPR000048 | GO:0005515 | |
| Gso13g0899 | 1077 | SMART | iq_5 | 830 | 852 | IPR000048 | GO:0005515 | |
| Gso13g0899 | 1077 | SMART | iq_5 | 734 | 756 | IPR000048 | GO:0005515 | |
| Gso13g0899 | 1077 | SMART | iq_5 | 757 | 779 | IPR000048 | GO:0005515 | |
| Gso13g0899 | 1077 | SMART | iq_5 | 805 | 827 | IPR000048 | GO:0005515 | |
| Gso13g0899 | 1077 | Pfam | Myosin head (motor domain) | 64 | 720 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Gso13g0899 | 1077 | MobiDBLite | consensus disorder prediction | 879 | 915 | - | - | |
| Gso13g0899 | 1077 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 38 | 785 | IPR027417 | - | |
| Gso13g0899 | 1077 | PRINTS | Myosin heavy chain signature | 92 | 111 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Gso13g0899 | 1077 | PRINTS | Myosin heavy chain signature | 149 | 174 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Gso13g0899 | 1077 | PRINTS | Myosin heavy chain signature | 196 | 223 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Gso13g0899 | 1077 | PRINTS | Myosin heavy chain signature | 429 | 457 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Gso13g0899 | 1077 | PRINTS | Myosin heavy chain signature | 482 | 510 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Gso13g0899 | 1077 | ProSiteProfiles | IQ motif profile. | 831 | 860 | IPR000048 | GO:0005515 | |
| Gso13g0899 | 1077 | ProSiteProfiles | IQ motif profile. | 758 | 787 | IPR000048 | GO:0005515 | |
| Gso13g0899 | 1077 | SUPERFAMILY | Tropomyosin | 901 | 994 | - | - | |
| Gso13g0899 | 1077 | Gene3D | - | 666 | 733 | - | - | |
| Gso13g0899 | 1077 | PANTHER | MYOSIN MOTOR DOMAIN PROTEIN AND DIL DOMAIN PROTEIN | 6 | 1015 | - | - | |
| Gso13g0899 | 1077 | PANTHER | MYOSIN | 6 | 1015 | - | - | |
| Gso13g0899 | 1077 | Coils | Coil | 924 | 979 | - | - | |
| Gso13g0899 | 1077 | Gene3D | - | 785 | 835 | - | - | |
| Gso13g0899 | 1077 | Gene3D | - | 735 | 784 | - | - | |
| Gso13g0899 | 1077 | MobiDBLite | consensus disorder prediction | 879 | 905 | - | - | |
| Gso13g0899 | 1077 | Pfam | IQ calmodulin-binding motif | 760 | 778 | IPR000048 | GO:0005515 | |
| Gso13g0899 | 1077 | Pfam | IQ calmodulin-binding motif | 786 | 803 | IPR000048 | GO:0005515 | |
| Gso13g0899 | 1077 | Pfam | IQ calmodulin-binding motif | 833 | 847 | IPR000048 | GO:0005515 | |
| Gso13g0899 | 1077 | Pfam | IQ calmodulin-binding motif | 737 | 755 | IPR000048 | GO:0005515 | |
| Gso13g0899 | 1077 | ProSiteProfiles | Myosin motor domain profile. | 62 | 732 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Gso13g0899 | 1077 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 312 | 601 | - | - | |
| Gso13g0899 | 1077 | ProSiteProfiles | IQ motif profile. | 783 | 807 | IPR000048 | GO:0005515 | |
| Gso13g0899 | 1077 | MobiDBLite | consensus disorder prediction | 1018 | 1077 | - | - | |
| Gso13g0899 | 1077 | MobiDBLite | consensus disorder prediction | 1018 | 1062 | - | - | |
| Gso13g0899 | 1077 | Pfam | Myosin N-terminal SH3-like domain | 10 | 46 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Gso13g0899 | 1077 | Gene3D | - | 439 | 623 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso13g0899 | Gso-Chr13 | 23291176 | 23313792 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso13g0899 | 1 | 983 | Myosins gene family | AT1G54560 | 63.540 | 0.0 | 1395 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso13g0899 | K10357 | - | gmx:100803485 | 2091.62 |