Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0898 ATGATGGGTGAGAAGTTTTGTGTGAACGAGGAAGACAAGGGTGTGTTGGAGTCTGTGCTGGGTGCAGAGGCTGTTGCGTTCTTTATTTCCGCACTTTCCAATAATGTCTTTTCCGGTGTGGTTGCGCCATCGGCCAGTACTGACCCGGGTCTCCGACAGCGGTTGTGCCAGCTTGTTGAGGGTTCCAAGTGGAATTATGCTGTGTTTTGGCAGGTTGCTGTCTTGAAATCTGGTGGTTCTGCCTTGGTTTGGGGTGATGGGCATTGCAGTGATCCCAAAGGGGAGAGGAATGGAGTTGGGAAGGAGGATGAGCAGGAGGTGAGAAAGAATGTGCTGCAGAAGCTTGATGCCTGCTTTGGTGGGTCTGTGTCGAAAGAGGCTAATTATGCGAGATTGGACAGGGTTTCGGATTTGCTCATGTTTTACTTATCCTCAATGTGTTATATATTTGGTTTTGATTCGCCATGTGGCCCTGGCAGTTCGTTCAAGTCTGGTAAATTGATTTGGGCTTCCGATGCTGCTGGTTGTTTAAACCAATTAGAATCTAGATCGTTTATGGGGAAATTGGCTGGTCTTCAAACTGTTGTGTTTGTTCCTCTGAAGTCCGGGGTGGTGGAGCTTGGTTCGCTCGAAATGGTGCCTGAAGAGCACGGTGTTGTGGAGATGGTCAGGACAGCATTTGGGGAATCCAGTCCCGGACAGGCAAAGGTGTTTCCGAAGATTTTTGGGCATGAGTTAAGCCTAGGGGACACAAAATCTCAGTCTATAACTATTAGTTTCTCCCCGAAGGTGGAAGATGATCCTGGTTTTACTTCGGACTCCTATGAGGTTCAAGCACTAGGGGTGAACCATGCTTATGGAAATTCTTCCAATGGGACTTTAGGTGTCAGTAATGAAGGTAAAATGTTCCCTCAACTGAATCAAATGATGGCTGGGAATTTTAATGCTCAAGGAAGCGGGGTTCCTTGTCTAGATCTCGGTAATGAAGACTCATCCTCCATTCATGCAGATGAGCGGAAGCCCAGAAAAAGAGGTAGAAAGCCGGCAAATGGGAGAGAGGAACCGCTGAATCATGTTGAAGCTGAGAGACAAAGACGTGAGAAGCTTAACCAAAGGTTTTATGCCTTGAGAGCTGTTGTCCCTAACATATCTAAAATGGACAAGGCATCTTTGCTTGGTGATGCCATTACCTTTATCACTGATCTCCAGATGAAGATCAAGGTGTTGGAAGCTGAGAAGAACATGATCCACAATCAGGACCAAAAATTGTCATTGCCAGATATGGATTTTCAGGAAAGAGAGGATGAGACAGTTGTGACAGTGAGATGCCCCTTAGATATTCACCCTGTTTCTAATGTTGTTAAAACGTTCAAGGAGCATCAAATTGTGGCTCAAGACTCCAGTGTTTCGACTACAGATGATAAAATTATTCACACATTCTCCATAAGAACTGAGGGAGGGGAGACTGCTGCTATACAGTTGAAAGAAAAGCTGGAAGCATCCCTATCCAAAAATCGATAG 1521 0.4576 MMGEKFCVNEEDKGVLESVLGAEAVAFFISALSNNVFSGVVAPSASTDPGLRQRLCQLVEGSKWNYAVFWQVAVLKSGGSALVWGDGHCSDPKGERNGVGKEDEQEVRKNVLQKLDACFGGSVSKEANYARLDRVSDLLMFYLSSMCYIFGFDSPCGPGSSFKSGKLIWASDAAGCLNQLESRSFMGKLAGLQTVVFVPLKSGVVELGSLEMVPEEHGVVEMVRTAFGESSPGQAKVFPKIFGHELSLGDTKSQSITISFSPKVEDDPGFTSDSYEVQALGVNHAYGNSSNGTLGVSNEGKMFPQLNQMMAGNFNAQGSGVPCLDLGNEDSSSIHADERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITFITDLQMKIKVLEAEKNMIHNQDQKLSLPDMDFQEREDETVVTVRCPLDIHPVSNVVKTFKEHQIVAQDSSVSTTDDKIIHTFSIRTEGGETAAIQLKEKLEASLSKNR* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0898 506 Coils Coil 399 419 - -
Gso13g0898 506 SMART finulus 359 408 IPR011598 GO:0046983
Gso13g0898 506 PANTHER MYC 2 504 IPR045084 GO:0003700|GO:0006355
Gso13g0898 506 PANTHER TRANSCRIPTION FACTOR BHLH3 2 504 - -
Gso13g0898 506 MobiDBLite consensus disorder prediction 331 364 - -
Gso13g0898 506 CDD ACT_UUR-ACR-like 437 504 - -
Gso13g0898 506 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 227 IPR025610 -
Gso13g0898 506 CDD bHLH_AtAIB_like 350 427 - -
Gso13g0898 506 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 353 402 IPR011598 GO:0046983
Gso13g0898 506 Gene3D - 346 420 IPR036638 GO:0046983
Gso13g0898 506 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 356 423 IPR036638 GO:0046983
Gso13g0898 506 MobiDBLite consensus disorder prediction 325 364 - -
Gso13g0898 506 Pfam Helix-loop-helix DNA-binding domain 357 403 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0898 Gso-Chr13 23267907 23270122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0898 2 504 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 48.134 1.90e-156 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso13g0898 bHLH-MYC_N 5.8e-44 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0898 - - gmx:100782107 1008.44