Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0886 ATGGTGATTATAAACCTTGGGAAGAAGAAGAGCGAGAGAGAAGGAATGCGACTTGGGAAATACGAGTTGGGTAGGACTCTTGGTGAGGGCAATTTTGGCAAAGTCAAGTTCGCTAGGAACACTGATTCTGGCCAAGCTTTTGCTGTTAAGATCATTGAGAAGAATAAGATCGTTGATCTCAACATCACCAATCAGATAAAGAGGGAAATAGCCACCTTAAAGCTCCTCCGGCATCCCAACGTTGTTAGATTATATGAGGTCTTGGCTAGCAAAACAAAAATTTATATGGTACTTGAGTACGTGAATGGAGGGGAGTTATTTGACATAATTGCATCCAAAGGTAAACTTACCGAAGGAGAATGTAGAAAGCTGTTCCAACAGTTAATTGATGGGGTGAGCTACTGCCACACTAAAGGTGTCTTCCACAGGGATCTCAAGCTTGAGAATGTACTAGTGGATAATAAAGGGAACATAAAAGTAACTGATTTTGGTCTTAGTGCTTTACCCCAGCATCTTAGGGAAGATGGACTGCTGCATACAACTTGTGGAAGTCCCAATTATGTAGCACCAGAGGTTCTTGCTAACAAGGGCTATGATGGTGCAACATCAGATACATGGTCATGTGGTGTTATATTGTATGTAAGCCTAACAGGATACTTACCTTTTGATGATAGAAATCTTGTAGTTCTCTATCAGAAGATTTTTAAAGGAGATGCTCAGATACCAAAATGGCTATCACCGGGTGCACAAAATATGATAAGGAGAATTCTTGATCCTAACCCCGAAACACGGATAACAATGGCTGGGATTAAAGAAGACCCATGGTTCAAGAAGGGTTATATTCCAGCAAATCCTGAGGATGAGGATGTACATGTTGACAATGAAGCCTTTTCCTCCCATGAAGAACCAAATGAAGCAGAACAGAGGAATTCAGGATCACCAACCCTAATCAATGCATTTCAATTGATAGGGATGTCTTCATGCTTAGACCTCTCTGGCTTTTTTGAGAAAGAGGATGTTTCTGAGAGAAAGATAAGATTTGCATCAATTCTTTCGGTTAAAGATCTGATCGATAGGATTGAAGATACTGTGACAGAAATGGAATTTAGAGTCGAGAAGAAAAATGGCAAATTGAAAGTGATGCGAGAGAACAAGGTGCACAAAACTCTCGGCTGCCTCTCAGTGGTAGTAGAGGTGTTTGAAATAAGTCCATCATTGTATGTAGTAGAATTAAGGAAGTCGTATGGAGATGGTTCTGTGTATAAACAGTTATGCAAGAAATTATTGAATGATTTGGGTGTTCCCCCCAAGCAAGGGCTAGTGAGATCAGCAGCAAATTAG 1341 0.4049 MVIINLGKKKSEREGMRLGKYELGRTLGEGNFGKVKFARNTDSGQAFAVKIIEKNKIVDLNITNQIKREIATLKLLRHPNVVRLYEVLASKTKIYMVLEYVNGGELFDIIASKGKLTEGECRKLFQQLIDGVSYCHTKGVFHRDLKLENVLVDNKGNIKVTDFGLSALPQHLREDGLLHTTCGSPNYVAPEVLANKGYDGATSDTWSCGVILYVSLTGYLPFDDRNLVVLYQKIFKGDAQIPKWLSPGAQNMIRRILDPNPETRITMAGIKEDPWFKKGYIPANPEDEDVHVDNEAFSSHEEPNEAEQRNSGSPTLINAFQLIGMSSCLDLSGFFEKEDVSERKIRFASILSVKDLIDRIEDTVTEMEFRVEKKNGKLKVMRENKVHKTLGCLSVVVEVFEISPSLYVVELRKSYGDGSVYKQLCKKLLNDLGVPPKQGLVRSAAN* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0886 446 ProSiteProfiles Protein kinase domain profile. 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0886 446 Pfam NAF domain 314 373 IPR004041 GO:0007165
Gso13g0886 446 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Gso13g0886 446 SMART serkin_6 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0886 446 CDD CIPK_C 318 429 - -
Gso13g0886 446 Gene3D Kinase associated domain 1, KA1 312 434 - -
Gso13g0886 446 PANTHER SERINE/THREONINE KINASE 13 443 - -
Gso13g0886 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Gso13g0886 446 Pfam Protein kinase domain 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g0886 446 ProSiteProfiles NAF domain profile. 312 336 IPR018451 GO:0007165
Gso13g0886 446 Gene3D Transferase(Phosphotransferase) domain 1 101 281 - -
Gso13g0886 446 SUPERFAMILY Protein kinase-like (PK-like) 18 287 IPR011009 -
Gso13g0886 446 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 13 443 - -
Gso13g0886 446 Gene3D Phosphorylase Kinase; domain 1 5 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0886 Gso-Chr13 23148070 23153439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0886 84 441 CBL-interacting serine-threonine protein kinases AT3G17510 68.232 1.63e-171 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gso13g0886 Pkinase 6.8e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0886 K07198 - gmx:100777468 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0886 13 23148070 23153439 Gso17g0333 17 3007269 3012505 GST
Gso13g0886 13 23148070 23153439 Gso15g1544 15 19566545 19575698 PCT
Gso15g1544 15 19566545 19575698 Gso13g0886 13 23148070 23153439 PCT