Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0881 ATGCTATATAGTATGAACTCATTGAACTATGATCCTACTATATATAAGTTGGCAACCGGGTTCAACTTCCCAACCGACAATTTATTTTTTAATTCATTCCTCTCTTGTTGCTTTCTACGGCTAGTTTTCCGGCCATCTTCTCAGAAGGCACTAATTGCTTCAGCTTCTTGTTGTAAAAGAGTCATTGGTAGAGGGGTTTGTGAGCAAAAGGAGTCTTTCTACATTGAAATGGAAGGGGATATCAGTGTGAATGGAGATCCTAACACTTACAGTAACAGCAATCAAGACTCAAAGAAGAGTGAGGCCAAAGATGAACCCGCCAAAACAGTACCCTTATACAGGCTTTTTTCATTTGCTGATCCTTTGGATCATTTGTTGATGTTTGTGGGAACTGTTGGTGCTATTGGGAATGGAATCTCCTTGCCCTTAATGACTCTGATATTTGGAAATATGATCAATGCATTTGGAGAATCCAGTAACACCAATGAGGTCGTCGATGAAGTTTCCAAGGTGTCTCTGAAATTTGTATACTTGGCTGTGGGTACCTTTTTCGCGTCATTTTTGCAGTTGACATGCTGGATGATCACTGGGGACAGACAAGCTGCAAGAATTAGAGGATTATACCTTCAAACAATTTTGAGGCAAGATGTCAGTTTCTTTGATAAAGAGACTAATACTGGAGAGGTTGTTGGAAGGATGTCAGGTGATACAGTTCTTATTCAAGATGCCATGGGTGAAAAGGTGGGACAGTTCATACAGTTAATATCAACTTTCTTTGGAGGTTTTGTTGTAGCATTCATCAAGGGATGGCTTTTAACTGTTGTCATGTTAGCTTGTATTCCACTCCTTGTCATGTCTGGTGCTATGATAACTGTGATTATTTCAAGAGCATCATCCGAAGGACAAGCTGCTTATTCTACAGCAGCAAGTGTAGTAGAGCAGACAATTGGTTCTATCCGAACTGTTGCATCATTTACTGGGGAGAGGCTAGCTATAGCCAAATACAATCAGTCCTTAAACAAGGCATATAAGACTGGAGTGCAAGAGGCACTAGCCTCTGGTTTGGGATTTGGTTTGCTCTACTTTGTTTTTATCTGCAGTTATGGTCTGGCTGTATGGTTTGGTGCAAAAATGATAATAGAGAAAGGATATACTGGAGGCAAGGTTTTGACTGTAATATTTGCTGTATTGACTGGCTCCATGTCTCTAGGGCAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCAGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATTAAAAGGAAGCCAGAAATTGATGCCTATGACACTACTGGTCGGAAGCTTGAAGACATTCGTGGTGATATAGAGCTTCGGGAGGTTTGCTTTAGTTATCCTACAAGACCTGATGAACTGATATTCAATGGATTTTCTCTTTCAATACCAAGTGGCACTACCGCAGCTTTGGTAGGACAAAGTGGGAGTGGGAAATCCACAGTTGTTAGTTTGATAGAGAGATTTTATGATCCACAGTCTGGTGCAGTGCTTATTGATGGTATCAACCTCAGAGAATTTCAACTGAAATGGATCAGACAGAAAATTGGCCTAGTCAGCCAGGAACCAGTTCTCTTTACTTGTAGCATTAAAGAGAATATTGCCTATGGCAAGGATGGTGCAACTGATGAAGAAATCAGAGCTGCAGCAGAACTTGCTAATGCTGCCAAATTTATAGATAAACTTCCTCAGGGACTAGACACAATGGTTGGTGAGCATGGTACTCAGCTCTCTGGGGGTCAAAAGCAGAGAGTTGCAATAGCAAGAGCAATTTTGAAAGATCCAAGAATCCTACTTTTGGATGAAGCTACAAGTGCCCTTGACACTGAATCAGAGCGGATTGTACAAGAGGCATTGGACAGAATAATGATAAACAGAACAACTGTCATAGTAGCCCACCGCTTGAGTACTATAAGGAATGCTGATACCATTGCTGTAATCCATCTAGGAAAAATAGTTGAAAGAGGTTCACATGTTGAGCTCACCAAGGATCCTGATGGAGCCTATAGCCAGCTTATCAGACTACAAGAAATTAAAAGATTAGAAAAGAATATAGATGTCAGAGAGCCTGAAAGTATAGTACATTCTGGAAGACATTCAAGTAAAAGGTCTTCTTTCTTACGATCTATAAGCCAAGAGTCACTGGGAGTAGGAAACAGTGGCCGCCATTCATTCTCAGCATCATTTGGTGTGCCCACATCTGTTGGCTTCATAGAACCTGCAGGTGAAGGGCCTCAAGATCCTCCTTCAACAGCTCCTTCACCACCAGAAGTGCCTCTTTATCGCCTGGCTTACCTAAACAAGCCAGAGATTCTAGTGTTACTGATGGGGACTGTATCTGCAGTGATAACCGGAGTAATATTACCTGTTTTTGGTCTATTGCTTTCCAAAATGATAAGTATTTTCTATGAGCCAGCTCATGAACTCCGTAAAGATTCAAAAGTCTGGGCAATAGTATTTGTTGGACTTGGGGCAGTATCATTCCTTGTTTATCCTGGTAGATTCTACTTTTTTGGTGTTGCTGGGGGTAAGTTGATCCAAAGGATTCGGAAAATGTGTTTTGAGAAAGTAGTTCACATGGAAGTAAGTTGGTTTGATGAAGCTGAGAATTCAAGTGGAGCAATTGGAGCAAGGCTTTCTACTGATGCAGCTTCTGTTCGAGCTTTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAAATACTGCCACAGCAATAGCTGGATTGGTAATTGCCTTTGAATCGAGCTGGCAGCTTGCTCTTATAATCCTTGCTTTGGTGCCTCTTCTAGGACTAAATGGATATCTGCAATTCAAGTTCTTAAAAGGATTCAGTGCAGATACAAAGAAATTGTATGAGGAAGCAAGCCAAGTGGCAAATGATGCTGTGGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAGGTGATGGAATTATACCAGGAAAAATGTGAAGGACCAATTAAGACAGGCAAAAGGCAAGGGATAATAAGTGGAATTAGTTTTGGAGTATCATTCTTTGTGCTGTATTCAGTTTATGCAACCAGTTTTTATGCTGGAGCTCGACTGGTCGAGGATAGAAAAGCAACATTCACAGATGTTTTCCGGGTCTTTTTTGCTCTCAGCATGGCCGCCATAGGAATCTCTCAATCTGGCTCTTTGGTCCCTGATTCAACTAAAGCAAAAGGTGCTGCTGCTTCCATATTTGCCATTCTTGACCGAAAGTCAGAAATAGACCCAAGCGATGACACTGGAATGACACTGGAAGAATTCAAGGGAGAGATTGAACTTAAGCATGTCAGTTTCAAGTATCCTACCCGACCCGATGTTCAAATATTCAGAGATCTTAGCTTGACCATTCATAGTGGCAAGACAGTAGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATTTCATTATTACAAAGATTTTATGACCCAGACTCAGGTCACATTACACTGGATGGAACAGAAATCCAAAGGATGCAAGTTAAATGGCTGAGACAACAGATGGGCCTGGTGAGTCAAGAGCCTGTGCTGTTTAATGACACCATCCGAGCCAATATTGCATATGGAAAAGCAGACGCAACCGAGGCAGAAATTATAACTGCAGCAGAATTGGCAAATGCTCATACCTTCATTAGTAGTTTGCAGAAGGGTTATGACACGTTAGTAGGGGAGCGAGGAGTTCAATTATCTGGGGGACAGAAGCAGCGTGTGGCAATTGCACGAGCTATAGTGAAGAGTCCGAAAATATTACTACTAGATGAAGCCACAAGTGCACTGGATGCGGAGTCTGAAAAAGTGGTTCAGGATGCACTAGACCGTGTTATGGTGGACCGAACCACAATAGTAGTGGCTCATAGGCTATCTACTATAAAGGGTGCAGATTTAATTGCAGTAGTTAAAAATGGGGTCATAGCAGAGAAGGGCAAGCATGAAGCATTACTCAACAAGGGAGGTGACTATGCTTCTTTAGTAGCATTGCATACAAGTGCTTCTACATGA 4053 0.4185 MLYSMNSLNYDPTIYKLATGFNFPTDNLFFNSFLSCCFLRLVFRPSSQKALIASASCCKRVIGRGVCEQKESFYIEMEGDISVNGDPNTYSNSNQDSKKSEAKDEPAKTVPLYRLFSFADPLDHLLMFVGTVGAIGNGISLPLMTLIFGNMINAFGESSNTNEVVDEVSKVSLKFVYLAVGTFFASFLQLTCWMITGDRQAARIRGLYLQTILRQDVSFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFIQLISTFFGGFVVAFIKGWLLTVVMLACIPLLVMSGAMITVIISRASSEGQAAYSTAASVVEQTIGSIRTVASFTGERLAIAKYNQSLNKAYKTGVQEALASGLGFGLLYFVFICSYGLAVWFGAKMIIEKGYTGGKVLTVIFAVLTGSMSLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDAYDTTGRKLEDIRGDIELREVCFSYPTRPDELIFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPQSGAVLIDGINLREFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDTESERIVQEALDRIMINRTTVIVAHRLSTIRNADTIAVIHLGKIVERGSHVELTKDPDGAYSQLIRLQEIKRLEKNIDVREPESIVHSGRHSSKRSSFLRSISQESLGVGNSGRHSFSASFGVPTSVGFIEPAGEGPQDPPSTAPSPPEVPLYRLAYLNKPEILVLLMGTVSAVITGVILPVFGLLLSKMISIFYEPAHELRKDSKVWAIVFVGLGAVSFLVYPGRFYFFGVAGGKLIQRIRKMCFEKVVHMEVSWFDEAENSSGAIGARLSTDAASVRALVGDALGLLVQNTATAIAGLVIAFESSWQLALIILALVPLLGLNGYLQFKFLKGFSADTKKLYEEASQVANDAVGSIRTVASFCAEEKVMELYQEKCEGPIKTGKRQGIISGISFGVSFFVLYSVYATSFYAGARLVEDRKATFTDVFRVFFALSMAAIGISQSGSLVPDSTKAKGAAASIFAILDRKSEIDPSDDTGMTLEEFKGEIELKHVSFKYPTRPDVQIFRDLSLTIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGTEIQRMQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKADATEAEIITAAELANAHTFISSLQKGYDTLVGERGVQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLNKGGDYASLVALHTSAST* 1351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0881 1350 Pfam ABC transporter transmembrane region 786 1056 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso13g0881 1350 Pfam ABC transporter transmembrane region 127 401 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso13g0881 1350 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1108 1344 IPR003439 GO:0005524
Gso13g0881 1350 SUPERFAMILY ABC transporter transmembrane region 108 434 IPR036640 GO:0005524|GO:0016021
Gso13g0881 1350 SMART AAA_5 1135 1327 IPR003593 -
Gso13g0881 1350 SMART AAA_5 477 665 IPR003593 -
Gso13g0881 1350 ProSitePatterns ABC transporters family signature. 589 603 IPR017871 GO:0005524
Gso13g0881 1350 CDD ABC_MTABC3_MDL1_MDL2 450 688 - -
Gso13g0881 1350 CDD ABC_6TM_Pgp_ABCB1_D2_like 776 1091 - -
Gso13g0881 1350 ProSitePatterns ABC transporters family signature. 1247 1261 IPR017871 GO:0005524
Gso13g0881 1350 PANTHER - 91 1347 - -
Gso13g0881 1350 CDD ABC_MTABC3_MDL1_MDL2 1108 1342 - -
Gso13g0881 1350 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 128 415 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso13g0881 1350 MobiDBLite consensus disorder prediction 85 105 - -
Gso13g0881 1350 CDD ABC_6TM_Pgp_ABCB1_D1_like 127 411 - -
Gso13g0881 1350 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 450 686 IPR003439 GO:0005524
Gso13g0881 1350 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 442 688 IPR027417 -
Gso13g0881 1350 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1097 1344 IPR027417 -
Gso13g0881 1350 Gene3D - 1098 1349 IPR027417 -
Gso13g0881 1350 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 91 1347 - -
Gso13g0881 1350 Pfam ABC transporter 1127 1275 IPR003439 GO:0005524
Gso13g0881 1350 Pfam ABC transporter 469 617 IPR003439 GO:0005524
Gso13g0881 1350 Gene3D ABC transporter type 1, transmembrane domain 173 1081 IPR036640 GO:0005524|GO:0016021
Gso13g0881 1350 Gene3D - 448 712 IPR027417 -
Gso13g0881 1350 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 787 1073 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso13g0881 1350 SUPERFAMILY ABC transporter transmembrane region 774 1093 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0881 Gso-Chr13 23108597 23114756 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0881 101 1345 Calmodulin-binding Proteins AT2G36910 45.780 0.0 1084
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0881 K05658 - gmx:100800293 2540.38