Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0880 ATGGCAGAGAATATTGACTTGTATGGAGATTCTGACATCAAGCAAGATTCAAAGAGCAAGGTCAAAGATGAATCTGCCAAAACGGTACCCTTATACAAGCTTTTCTCATTTGCTGATCCTTTGGATCATTTGTTGATGTTTGTGGGGGCTGTTGGTGCTATTGGGAATGGAATCTCCATGCCCTTAATGACTTTGATATTTGGAAATATGATCAATGCATTTGGAGCAACCGAAAACTCCAACGAAGTTGTTGATGAAGTTTCTAAGGTGTCACTGAAATTTGTATACTTGGCCGTGGGTACCTTTTTTGCGTCGCTTTTGCAGTTGACTTGCTGGATGATCACGGGGGAGAGACAAGCTGCAAGAATTAGAGGGTTATACCTTCAAAATATTTTGAGGCAAGATGTCAGCTTCTTTGATAAAGAAACTAGAACTGGAGAGGTTGTTGGAAGGATGTCAGGTGACACTGTTCTTATTCAAGATGCCATGGGTGAGAAGGTGGCACAGTTCATACAGTTGATGACAACTTTCGTTGGCGGCTTTGTAATAGCATTCAGCAGGGGATGGCTTCTAACTCTTGTCATGCTTTCTAGTATTCCACCTCTTGTTTTGTGTGGTTCTATGCTAGGCCTGATCATTACGAAAGCATCATCCAGGGCACAAGCGGCTTATTCTATAGCAGCAAGTATAGTAGAGCAGACAATAGGTTCTGTCAGAACTGTTGCATCATTCACCGGGGAGAAGCAAGCTATAGATAAATATAATCAGTCCATAATCAAAGCTTATAGGGCTGGAGTGCAAGAAGCACTAGCTACTGGTTTGGGGTTTGGTTCTCTCTATTTTGTTTTTAACTGCAGTTATAGTTTGGCTACATGGTTTGGTGCAAAAATGGTAATAGAGAAAGGATACACAGGAGGAGAGGTTGTGACAGTAATTATGGCTGTATTGACAGGCTCCATGTCTCTTGGGCAGGCATCACCAAGCTTGAGTGCTTTTGCTGCAGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATTAAAAGGAAGCCAGAAATTGATGCTTATGACACTACTGGTCGGCAGCTTGATGACATCCGTGGAGATATAGAACTTAGGGAGGTTTGCTTTAGTTATCCTACTAGACCTGATGAACTGATATTCAATGGATTTTCTCTTTCAATACCAAGCGGCACTACAACAGCTTTGGTAGGAGAAAGTGGGAGTGGGAAATCCACAGTTGTTGGTTTGATAGAGAGATTTTATGATCCACAGGCAGGTGAAGTTCTCATTGACAGTATCAACCTCAAAGAATTCAAACTGAAATGGATCAGACAGAAAATAGGCCTAGTTAGCCAGGAACCAGTTCTCTTTACATGCAGTATTAAAGAGAATATTGCCTATGGCAAGGATGGTGCAACTGTTGAAGAAATCAGAGCTGCAGCAGAACTAGCTAATGCCGCCAAATTTATAGATAAACTTCCTCAGGGACTAGACACAATGGTTGGTGAGCATGGGGCTCAGCTCTCTGGGGGTCAAAAGCAAAGAGTTGCAATAGCAAGAGCAATTTTGAAAGACCCAAGAATCCTACTTCTGGATGAAGCTACAAGTGCCCTTGATGCTGAATCTGAGAAAATTGTACAGGAGGCATTGAACAGAATAATGATAAACCGAACAACTGTCATTGTAGCCCACCGCTTAAGTACTATAAGGAATGCTGATAGCATTGCTGTTATGCATCAAGGAAAAATAGTTGAAAGAGGTTCACATGCTGAGCTTACAAGGGATCCTATTGGAGCCTATAGTCAGCTCATTAGACTGCAAGAAGTTAAAAGGTCAGGACAAAATGTTGCAAATGACACAGACAAGCTAGAAGGTACTGCACATTTTGGAAGACAGTCAAGTCAAAGATCTTTCTTACAGGCTATAAGTCAAAGATCATCAGAAGTTGGAAGCAGTGGTCGTAACTCATTCTCAGAATCACATGCGGTTGGCTTCTTGGAACCTGCAGGTGGAGTGCCTCAAACATCTCCAACAGTTTCTTCACCACCGGAAGTGCCACTCTATCGCCTGGCATATTTAAACAAACCTGAGACTCCAGTCTTACTGGCAGGGAGTATAGCTGCAATAATAAATGGGGTGTTATTACCCATTGTTGCAATCTTTATGTCCAAAATGATTAGTATTTTCTATGAGCCAGCTGATGAGCTTCGTAAAGATTCAAAACTTTGGGCATTATTATTTGTTGTGCTTGGCGTGGTATCATTTATCATGCCTCCTTGTAGATTCTACCTTTTTGGCGTTGCTGGTGGTAAGTTGATCAAAAGGATTCGGAAATTGTGTTTTGAGAAAGTAGTTCACATGGAAGTTAGTTGGTTCGATGAAGCTGAACATTCAAGTGGAGCAATTGGAGCAAGGCTTTCTTCTGATGTAGCTGCTGTTCGAGCTTTGGTTGGGGATGCACTTGGTTTGTTGGTTCAAAATATTGCTACAGCAGTAGGTGGCTTGGTAATTGCTTTTGAAGCAAGCTGGCAGCTTGCTCTTATAATGCTTGCTTTGGCACCTTTATTAGTACTAAATGGATACGTGCAATTCAAGTTCTTGAAGGGATTCAGCGCAAATTCAAAGAAACTGTATGAGGAAGCAAGTCAAGTGGCAAATGATGCTGTAGGGAGTATAAGAACAGTTGCTTCTTTCTGTTCTGAAAAGAAGGTGATGAAATTATACCAGGAAAAATGTGAAGGACCAATTAGGACAGGCATAAGGCGAGGAATAATAAGTGGAATTAGTTATGGGGTATCATTCTTCATGCTGTATGCAGTTTATGCATGCAGTTTCTATGCTGGAGCTCGACTTATAGAGGATGGAAAATCAACATTCTCAGATGTTTTCCGCGTCTTTTTTGCTCTCAGCATGACAGCTATGGGAATTTCGCAATCTGGCTCTTTGGTCCCTGATTCAAGTAATTCAAAAAGTGCTGCCGCTTCTGTATTTGCTATTCTTGACCAGAAGTCACAAATTGACCCAAGTGATGACTCTGGATTGACATTGGAAGAAGTCAAGGGAGAGATTGAATTTAACCATGTCAGTTTCAAGTATCCTACCAGACCTGATGTTCAAATATTCAGAGATCTTAGTTTGACCATTCATAGTGGCAAGACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATTTCACTATTACAAAGGTTTTATGACCTAGATTCAGGTCACATTACACTGGACCGAAACGAAATCCAAAGGATGCAAATTAAATGGCTAAGACAACAGATGGGCCTGGTGAGCCAAGAGCCTGTGCTGTTTAATGACACCATCCGAGCCAATATTGCATATGGAAAGGGCGGTGATGCAACAGAGGCAGAAATTATAGCTGCAGCAGAACTGGCAAATGCTCACAACTTCACTTGTAGTTTGCAGAAGGGTTATGACACAATAGTAGGGGAGAGAGGGATTCAACTATCTGGAGGGCAGAAGCAGCGGGTGGCAATTGCACGAGCTATAGTGAAGAATCCAAAAATATTACTACTAGATGAAGCCACAAGTGCTCTTGATGCCGAGTCTGAAAAAGTGGTTCAGGATGCACTAGACCGTGTTATGGTGGACCGAACCACAATAGTAGTGGCTCATAGGTTATCAACTATAAAGGGTGCAGATTTAATTGCAGTAGTTAAAAACGGGGTCATAGCAGAGAAGGGAAAGCACGAAGCATTACTCAACAAAGGAGGTGACTATGCTTCCTTAGTGGCATTGCATACAAGTGCTTCTACATCTTAG 3804 0.4188 MAENIDLYGDSDIKQDSKSKVKDESAKTVPLYKLFSFADPLDHLLMFVGAVGAIGNGISMPLMTLIFGNMINAFGATENSNEVVDEVSKVSLKFVYLAVGTFFASLLQLTCWMITGERQAARIRGLYLQNILRQDVSFFDKETRTGEVVGRMSGDTVLIQDAMGEKVAQFIQLMTTFVGGFVIAFSRGWLLTLVMLSSIPPLVLCGSMLGLIITKASSRAQAAYSIAASIVEQTIGSVRTVASFTGEKQAIDKYNQSIIKAYRAGVQEALATGLGFGSLYFVFNCSYSLATWFGAKMVIEKGYTGGEVVTVIMAVLTGSMSLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDAYDTTGRQLDDIRGDIELREVCFSYPTRPDELIFNGFSLSIPSGTTTALVGESGSGKSTVVGLIERFYDPQAGEVLIDSINLKEFKLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATVEEIRAAAELANAAKFIDKLPQGLDTMVGEHGAQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESEKIVQEALNRIMINRTTVIVAHRLSTIRNADSIAVMHQGKIVERGSHAELTRDPIGAYSQLIRLQEVKRSGQNVANDTDKLEGTAHFGRQSSQRSFLQAISQRSSEVGSSGRNSFSESHAVGFLEPAGGVPQTSPTVSSPPEVPLYRLAYLNKPETPVLLAGSIAAIINGVLLPIVAIFMSKMISIFYEPADELRKDSKLWALLFVVLGVVSFIMPPCRFYLFGVAGGKLIKRIRKLCFEKVVHMEVSWFDEAEHSSGAIGARLSSDVAAVRALVGDALGLLVQNIATAVGGLVIAFEASWQLALIMLALAPLLVLNGYVQFKFLKGFSANSKKLYEEASQVANDAVGSIRTVASFCSEKKVMKLYQEKCEGPIRTGIRRGIISGISYGVSFFMLYAVYACSFYAGARLIEDGKSTFSDVFRVFFALSMTAMGISQSGSLVPDSSNSKSAAASVFAILDQKSQIDPSDDSGLTLEEVKGEIEFNHVSFKYPTRPDVQIFRDLSLTIHSGKTVALVGESGSGKSTVISLLQRFYDLDSGHITLDRNEIQRMQIKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHNFTCSLQKGYDTIVGERGIQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLNKGGDYASLVALHTSASTS* 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0880 1267 Pfam ABC transporter transmembrane region 703 973 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso13g0880 1267 Pfam ABC transporter transmembrane region 46 320 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso13g0880 1267 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 47 334 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso13g0880 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 607 IPR027417 -
Gso13g0880 1267 CDD ABC_MTABC3_MDL1_MDL2 369 607 - -
Gso13g0880 1267 CDD ABC_MTABC3_MDL1_MDL2 1023 1258 - -
Gso13g0880 1267 CDD ABC_6TM_Pgp_ABCB1_D1_like 46 330 - -
Gso13g0880 1267 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1023 1260 IPR003439 GO:0005524
Gso13g0880 1267 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 702 988 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso13g0880 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1012 1260 IPR027417 -
Gso13g0880 1267 SMART AAA_5 1050 1243 IPR003593 -
Gso13g0880 1267 SMART AAA_5 396 582 IPR003593 -
Gso13g0880 1267 ProSitePatterns ABC transporters family signature. 508 522 IPR017871 GO:0005524
Gso13g0880 1267 SUPERFAMILY ABC transporter transmembrane region 33 353 IPR036640 GO:0005524|GO:0016021
Gso13g0880 1267 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 369 605 IPR003439 GO:0005524
Gso13g0880 1267 PANTHER - 15 1263 - -
Gso13g0880 1267 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 15 1263 - -
Gso13g0880 1267 Gene3D - 1013 1266 IPR027417 -
Gso13g0880 1267 Gene3D ABC transporter type 1, transmembrane domain 92 993 IPR036640 GO:0005524|GO:0016021
Gso13g0880 1267 SUPERFAMILY ABC transporter transmembrane region 689 1008 IPR036640 GO:0005524|GO:0016021
Gso13g0880 1267 Gene3D - 367 634 IPR027417 -
Gso13g0880 1267 ProSitePatterns ABC transporters family signature. 1163 1177 IPR017871 GO:0005524
Gso13g0880 1267 Pfam ABC transporter 388 536 IPR003439 GO:0005524
Gso13g0880 1267 Pfam ABC transporter 1042 1191 IPR003439 GO:0005524
Gso13g0880 1267 CDD ABC_6TM_Pgp_ABCB1_D2_like 691 1006 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0880 Gso-Chr13 23100512 23106175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0880 22 1261 Calmodulin-binding Proteins AT2G36910 44.489 0.0 1031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0880 K05658 - gmx:102660078 2352.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0880 13 23100512 23106175 Gso17g0338 17 3046170 3052060 GST