Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0879 ATGGCACAGGATATCGCCTTGAATCGAGACTCGGACAGCAAGGAAGATTCAAAGAGCAAGGCCAAAGATAAAACTGTCAAAACAGTACCCTTATACAAGCTTTTCTCATTTGCTGATCCTTTGGATAATTTATTGATGTTTTTGGGGACAGTGGGGGCTATTGGGAATGGAGTCTCCATACCCTTAACGATTCTGATGTTTGGCAATATGATCAATGCATTTGGAGGAACCGAAGATTCCAACGTTGTTGATGAAGTTTCCAAGGTGTCTCTGAAATTTGTATACTTCGCTGTGGGTACTTTTCTTTTGTCACTTCTGCAGTTGACTTGCTGGATGGTCACTGGGGAGAGACAAGCCACAAGAATTAGAGGTTTATACCTTAAAACAATTTTGAGGCAAGATGTCACCTTCTTTGATAAGGAAACTAGAACTGGAGAGGTTGTTGGAAGGATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGTGAGAAGGTGGGACAATTCTTGCAGTTCATAGCAACTTTCATTGGATCTTTTGCAGTAGCATTCATCAAGGGATGGCTTCTAACTGTTGTAATGCTATCTTGTATTCCACCTCTTGCGTTGGTTGGTGCTGTGCTAGGCCAGGTTATTTCAAAAGCATCATCCAGGGGACAAGAAGCTTATTCTATAGCAGCAACTGTGGCTGAGCAGACAATTGGTTCTATCCGAACTGTTGCTTCATTCACTGGGGAGAAGCAAGCTATAGCTAATTATAATCAGTCCTTAACCAAAGCTTACAAGGCTGGAGTGCAAGGGCCACTAGCTTCTGGTTTGGGGTTTGGTGCTCTGTATTTTGTTTTTACCTGCAGTTATGGTTTGGCTACATGGTTTGGTGCAAAAATGATAATAGAGAAAGGATATACAGGAGGAGAGGTTATCACAGTAATTGTTGCTGTATTGAATGGATCCATGTCTCTTGGGCAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCAGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATTAAAAGGAAGCCAGAAATTGATGCTTATGACACTACTGGTCGGCAGCTTGATGACATCCGTGGAGATATAGAACTTAGGGAGGTTTGCTTTAGTTATCCTACTAGACCTGATGAACTGATATTCAATGGATTTTCTCTTTCAATACCAAGCGGCACTACAACAGCTTTGGTAGGAGAAAGTGGGAGTGGGAAATCCACAGTTGTTGGTTTGATAGAGAGATTTTATGATCCACAGGCAGGTGAAGTTCTCATTGACAGTATCAACCTCAAAGAATTCAAACTGAAATGGATCAGACAGAAAATAGGCCTAGTTAGCCAGGAACCAGTTCTCTTTACATGCAGTATTAAAGAGAATATTGCCTATGGCAAGGATGGTGCAACTGATGAAGAAATCAGAGCTGCAGCAGAACTAGCTAATGCCGCCAAATTTATAGATAAACTTCCTCTGGGACTAGACACAATGGTTGGTGAGCATGGAGCTCAGCTCTCTGGGGGTCAAAAGCAAAGAGTTGCAATAGCAAGAGCAATTTTGAAAGACCCAAGAATCCTACTTCTGGATGAAGCTACAAGTGCCCTTGATGCTGAATCTGAGAAAATTGTACAGGAGGCATTGGACAGAATAATGATAAACCGAACAACTGTCATTGTAGCCCACCGCTTAAGTACTATAAGGAATGCTGATAGCATTGCTGTTATTCATCAAGGAAAAATAGTTGAAAGAGGTTCACATGCTGAGCTCACCAAGGATCCTAATGGAGCCTATAGGCAGCTCATTAGACTGCAAGAAATTAAAGGGTCAGAAAAAAATGCAGCAAATGACACAGACAAGATAGAAAGTATAGTGCATTCTGGAAGACAATCAAGTCAAAGATCTTCCATACAATCTATAAGCCAAAGGTCATCAGGAGTTGGAAGTAGCGGTTGTAACTCATTCTCAGAATCACATGGTGTGCCTGCAACAGTTGGCTTCTTGGAACCTTCAGGCGGAAGACCTCAAGCTCCTCCTTCAACAGTTTCTTCACCACCAGAAGTGCCACTTTATCGCCTGGCATATTTAAACAAGCCTGAGATTCCATTCTTACTGATAGGGACTATAGCCGCAGTAGGATCTGGAGTAATATTACCCATTCTTGCACTCTTCATCTCCAAAATGATAAGTATTTTCTATGAGCCAGTTGATGAACTTCATAAAGATTCAAAACATTGGGCATTACTATTTGTTGCACTTGGTGTGGTATCATTTGTCATGCCTCCATGTAGATTCTACCTTTTTGGCATTGCTGGTGGTAAGTTAATCAAAAGGATCCGGATAATGTGTTTTGAGAAAGTAGTTCACATGGAAGTTAGTTGGTTCGATGAAGCTGAACATTCAAGTGGAGCAATAGGAGCAAGGCTCTCATCTGATGCAGCTGCTGTTCGAGCTTTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAAATATTGCTACAGCAGTAGCTGGCTTGGTAATTGCTTTTGATGCAAGCTGGCAGCTTGCTCTTATAATTCTTGCTTTGGCACCTCTATTAGCACTAAATGGATACGTGCAATTGAAGGTCTTGAAAGGATTCAGCGCAGATGCAAAGAAACTGTATGAGGAAGCAAGTCAAGTGGCGAATGATGCTCTAGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAAAGAAGGTAATGAAATCATACGAGGAAAAATGTGAAGGACCAATTAGGACAGGCATAAGGCGAGGAATAATAAGTGGAATTAGTTATGGGGTATCATTCTTTATGCTGTATGCAGTTTATGCATGCAGTTTTTATGCTGGGGCTCGACTTGTACAGGATGGAAAAGCAACAATGTTGGATGTTTTCCGTGTCTTTTTTGCTCTCAACTTGGCAGCTGTGGGAATCTCTCAATCTGGATCTTTGGTCCCTGATTCAAGTAATTCAAAAAGTGCCGCTGCTTCTGTATTTGCTATTCTTGATCGAAAGTCACAAATTGACCCAAGTGATGACTCTGGATTGACATTGGAAGAAGTCAAGGGAGAGATTGAATTTAAGCATGTAAGTTTCAAGTATCCTACCAGACCTGATGTTCAAATATTCAGAGATCTTTGCTTGACCATTCATAATGGCAAGACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACGGTGATCTCATTATTACAAAGATTTTATGATCCAGACTTGGGTAACATTACACTGGATGGAACTGAAATCCAAAGGATGCAAGTTAAATGGCTGAGACAACAGATGGGCCTGGTGAGCCAAGAACCTGTGCTGTTTAATGACACCATCCGAGCCAATATTGCATATGGAAAGGGCGGCGATGCAACAGAGGCAGAAATTATAGCTGCAGCAGAACTCGCAAATGCTCACAACTTCACTTGTAGTTTGCAGGAGGGTTATGACACAATAGTAGGGGAAAGAGGGATTCAACTATCTGGAGGGCAGAAGCAGCGGGTGGCAATTGCACGAGCTATAGTGAAGAATCCAAAAATATTACTACTAGATGAAGCCACAAGTGCACTGGATGCTGAGTCTGAAAAAGTGGTTCAGGATGCACTAGACTGCGTTATGGTGGACCGAACCACAATAGTAGTGGCTCATAGGCTATCCACTATTAAGGGTGCAGATTTAATCGCAGTAGTTAAAAACGGGGTAATAGCAGAAAAGGGAAAACATGAAGCATTACTCAACAAAGGAGGTGACTATGCTTCCTTAGTAGCATTGCACACAACTGCATCTACATCTTAG 3816 0.4201 MAQDIALNRDSDSKEDSKSKAKDKTVKTVPLYKLFSFADPLDNLLMFLGTVGAIGNGVSIPLTILMFGNMINAFGGTEDSNVVDEVSKVSLKFVYFAVGTFLLSLLQLTCWMVTGERQATRIRGLYLKTILRQDVTFFDKETRTGEVVGRMSGDTVLIQDAMGEKVGQFLQFIATFIGSFAVAFIKGWLLTVVMLSCIPPLALVGAVLGQVISKASSRGQEAYSIAATVAEQTIGSIRTVASFTGEKQAIANYNQSLTKAYKAGVQGPLASGLGFGALYFVFTCSYGLATWFGAKMIIEKGYTGGEVITVIVAVLNGSMSLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDAYDTTGRQLDDIRGDIELREVCFSYPTRPDELIFNGFSLSIPSGTTTALVGESGSGKSTVVGLIERFYDPQAGEVLIDSINLKEFKLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPLGLDTMVGEHGAQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESEKIVQEALDRIMINRTTVIVAHRLSTIRNADSIAVIHQGKIVERGSHAELTKDPNGAYRQLIRLQEIKGSEKNAANDTDKIESIVHSGRQSSQRSSIQSISQRSSGVGSSGCNSFSESHGVPATVGFLEPSGGRPQAPPSTVSSPPEVPLYRLAYLNKPEIPFLLIGTIAAVGSGVILPILALFISKMISIFYEPVDELHKDSKHWALLFVALGVVSFVMPPCRFYLFGIAGGKLIKRIRIMCFEKVVHMEVSWFDEAEHSSGAIGARLSSDAAAVRALVGDALGLLVQNIATAVAGLVIAFDASWQLALIILALAPLLALNGYVQLKVLKGFSADAKKLYEEASQVANDALGSIRTVASFCAEKKVMKSYEEKCEGPIRTGIRRGIISGISYGVSFFMLYAVYACSFYAGARLVQDGKATMLDVFRVFFALNLAAVGISQSGSLVPDSSNSKSAAASVFAILDRKSQIDPSDDSGLTLEEVKGEIEFKHVSFKYPTRPDVQIFRDLCLTIHNGKTVALVGESGSGKSTVISLLQRFYDPDLGNITLDGTEIQRMQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHNFTCSLQEGYDTIVGERGIQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDCVMVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLNKGGDYASLVALHTTASTS* 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0879 1271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1016 1264 IPR027417 -
Gso13g0879 1271 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1027 1264 IPR003439 GO:0005524
Gso13g0879 1271 PANTHER - 10 1267 - -
Gso13g0879 1271 CDD ABC_MTABC3_MDL1_MDL2 1027 1262 - -
Gso13g0879 1271 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 10 1267 - -
Gso13g0879 1271 ProSitePatterns ABC transporters family signature. 507 521 IPR017871 GO:0005524
Gso13g0879 1271 Pfam ABC transporter transmembrane region 46 319 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso13g0879 1271 Pfam ABC transporter transmembrane region 705 976 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso13g0879 1271 ProSitePatterns ABC transporters family signature. 1167 1181 IPR017871 GO:0005524
Gso13g0879 1271 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 706 992 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso13g0879 1271 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 47 333 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso13g0879 1271 Gene3D - 366 619 IPR027417 -
Gso13g0879 1271 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 368 604 IPR003439 GO:0005524
Gso13g0879 1271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 606 IPR027417 -
Gso13g0879 1271 Pfam ABC transporter 387 535 IPR003439 GO:0005524
Gso13g0879 1271 Pfam ABC transporter 1047 1195 IPR003439 GO:0005524
Gso13g0879 1271 CDD ABC_6TM_Pgp_ABCB1_D1_like 46 329 - -
Gso13g0879 1271 MobiDBLite consensus disorder prediction 1 21 - -
Gso13g0879 1271 Gene3D ABC transporter type 1, transmembrane domain 91 1001 IPR036640 GO:0005524|GO:0016021
Gso13g0879 1271 SMART AAA_5 395 581 IPR003593 -
Gso13g0879 1271 SMART AAA_5 1054 1247 IPR003593 -
Gso13g0879 1271 Gene3D - 1017 1270 IPR027417 -
Gso13g0879 1271 SUPERFAMILY ABC transporter transmembrane region 693 1011 IPR036640 GO:0005524|GO:0016021
Gso13g0879 1271 SUPERFAMILY ABC transporter transmembrane region 27 352 IPR036640 GO:0005524|GO:0016021
Gso13g0879 1271 MobiDBLite consensus disorder prediction 626 657 - -
Gso13g0879 1271 CDD ABC_MTABC3_MDL1_MDL2 368 606 - -
Gso13g0879 1271 CDD ABC_6TM_Pgp_ABCB1_D2_like 695 1010 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0879 Gso-Chr13 23086811 23092975 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0879 22 1270 Calmodulin-binding Proteins AT2G36910 45.000 0.0 1043
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0879 K05658 - gmx:100799760 2340.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0879 13 23086811 23092975 Gso17g0339 17 3070911 3076531 GST