Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0874 ATGGAGGTGGAGGATGACTGGGATTTGAGCGCAGAGGACCTCGATTCTCTCGAAAGAGACGCTTTCCAGAAAATTGCTCAACTACGCAACCCTACTCCTCCTCCTTCTTCTCCGCATCAACGCCACCATTCTGCATCTGCAACAACCAACAACCTCCCACCAAAACCCCTTCCCAATTCGCGTTCCCAAACTGTTGATGCGTTCTCTCAAGGAGCAAGAGCATTGCCCACGACATTGAAATCAGGGACAAACAATGACAATCAGGCTAAAGAGCTGCCAAAGTTTTCGGTCAAATTTTTTCTTCATTCCAGTGGAAATGTTGCAGCAAAGTTTCAATATGACCAGGTAGTAATTGCTGCTTTTCGAAGAATCCCTAGATCTTCTTGGAATGCAAAGGAACGGTTATGGATATTCCCACTATCTTCCTTGTCAGAAGCAGAAAAGGTTATTGGAGAAATACCTGGTTATAATGTTCAGGTAGATAACTTAGATCCCTTAGTGCAACGTGCCATTGTTGCAGCGTCTGCAGTTCCAGATCTTCAAGATCGATACCACAAGATCCCTAGTTTTATTGAATCAAAGCTATTGCCATTTCAGCGAGAAGGTGTTAGGTTTATATTGCAGCATGGAGGACGTGTTCTCTTAGCAGATGAAATGGGACTTGGGAAAACTTTGCAGGCCATTGCTGTAGCTTCTTGTGTTCAGGACTCGTGGCCTGTTCTCATAATTGCACCATCTTCGTTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTATTGTCTTGTCTCAAAATGGTGGATCAAATAGAGGAGGTTTCAATATAGTATCTTCAAGTGCCAAAAGCAGCATTCATCTGGATGGACTATTCAACATTATCTCATACGATTTGGTGCCAAAGCTACAGAATATGCTTATGACATGTAACTTTAAGGTTGTGATTGCTGATGAGTCACATTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCAGTCATAAAGAAAGCTCAATATGCATTATTGCTTAGTGGAACACCTGCTTTATCACGACCAATTGAACTATTCAAGCAGCTGGAAGCTTTGTATCCTGATGTATATAGGAACGTTCATGAATATGGTAACCGGTACTGCAAGGGTGGATTTTTTGGAGTTTATCAAGGTGCAAGTAACCATGAAGAGTTGCACAACTTGATCAAGGCAACAGTGATGATTCGCAGGCTTAAAAAGGACGTTCTTTCTCAACTTCCTGTAAAGCGCAGGCAACAAGTCTTCCTAGACTTGGCTGGCAAGGACATGAAGCAAATTAATGCTTTATTTCGAGAGTTGGAGATGGTTAAAGCCAAAATTAAGGCAGCTAAATCACAAGAGGAGGCTGAATCTCTCAAGTTTGCTCAAAAGAATCTTATTAACAAGATATATACTGATTCTGCAGAAGCCAAGATTCCATCTGTTCTTGATTATGTTGGAACTGTCATTGAGGCAGGATGCAAGTTTCTTATATTTGCACACCATCAGCCAATGATCGATTCAATACACGAGTTTCTTCTTAAGAAAAAAGTGGGTTGCATACGAATTGATGGAAGTACACCTGCTGCATCCAGGCAACAATTGGTTACTGACTTTCAGGAAAAAGATTCTATCAAGGCAGCAGTGCTATCTATTAAAGCTGGAGGCGTTGGGTTAACTTTAACTGCTGCCAGCACAGTAATCTTTTCAGAATTGTCTTGGACTCCTGGTGACCTAATTCAGGCCGAAGACCGTGCTCATAGAATTGGCCAGGTGTCTTCAGTGAATATATACTACTTGCTAGCAAATGACACGGTTGATGACATCATATGGGACGTAGTGCAAAACAAACTGGAAAATTTGGGGCAGATGTTAGACGGCCATGAGAACGCCTTGGAGGTCTCAGCTAGTCTGCCGGTGAATAGCCCTTCAAAGCAGAAAACTCTAGACCAGTTTGTTAGAAGATGTGATAACACGGATGGGTTGGAATATGAGCCCAACCCCAAACGTCCCCGAAACTGA 2064 0.4234 MEVEDDWDLSAEDLDSLERDAFQKIAQLRNPTPPPSSPHQRHHSASATTNNLPPKPLPNSRSQTVDAFSQGARALPTTLKSGTNNDNQAKELPKFSVKFFLHSSGNVAAKFQYDQVVIAAFRRIPRSSWNAKERLWIFPLSSLSEAEKVIGEIPGYNVQVDNLDPLVQRAIVAASAVPDLQDRYHKIPSFIESKLLPFQREGVRFILQHGGRVLLADEMGLGKTLQAIAVASCVQDSWPVLIIAPSSLRLQWASMIQQWLNIPSSDILIVLSQNGGSNRGGFNIVSSSAKSSIHLDGLFNIISYDLVPKLQNMLMTCNFKVVIADESHFLKNAQAKRTTASLPVIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYRNVHEYGNRYCKGGFFGVYQGASNHEELHNLIKATVMIRRLKKDVLSQLPVKRRQQVFLDLAGKDMKQINALFRELEMVKAKIKAAKSQEEAESLKFAQKNLINKIYTDSAEAKIPSVLDYVGTVIEAGCKFLIFAHHQPMIDSIHEFLLKKKVGCIRIDGSTPAASRQQLVTDFQEKDSIKAAVLSIKAGGVGLTLTAASTVIFSELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQNKLENLGQMLDGHENALEVSASLPVNSPSKQKTLDQFVRRCDNTDGLEYEPNPKRPRN* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0874 687 ProSiteProfiles HARP domain profile. 88 165 IPR010003 -
Gso13g0874 687 Coils Coil 447 467 - -
Gso13g0874 687 CDD DEXHc_HARP_SMARCAL1 195 418 - -
Gso13g0874 687 SMART helicmild6 521 604 IPR001650 -
Gso13g0874 687 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 495 647 IPR001650 -
Gso13g0874 687 MobiDBLite consensus disorder prediction 39 65 - -
Gso13g0874 687 Gene3D - 457 674 IPR027417 -
Gso13g0874 687 MobiDBLite consensus disorder prediction 1 65 - -
Gso13g0874 687 Pfam Helicase conserved C-terminal domain 505 604 IPR001650 -
Gso13g0874 687 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 647 IPR027417 -
Gso13g0874 687 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 3 671 - -
Gso13g0874 687 SMART ultradead3 191 384 IPR014001 -
Gso13g0874 687 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 418 IPR027417 -
Gso13g0874 687 CDD SF2_C_SNF 491 615 - -
Gso13g0874 687 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 3 671 IPR030101 GO:0006281|GO:0031297|GO:0036310
Gso13g0874 687 Pfam SNF2-related domain 213 473 IPR000330 GO:0005524|GO:0140658
Gso13g0874 687 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 376 IPR014001 -
Gso13g0874 687 Gene3D - 167 442 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0874 Gso-Chr13 23035770 23045376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0874 385 631 RAD5 or RAD16-like Gene Family AT1G61140 29.231 3.10e-17 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso13g0874 SNF2_N 1.8e-27 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0874 K14440 - gmx:100797654 1330.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0874 13 23035770 23045376 Gso17g0343 17 3103898 3113908 GST