Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0871 ATGGAGGGCAAAATTGCATTGAAAAAATTGCTGGAAGTTCAGGAAAAGGCATACGTTAATGATACAGATGCAATCAACTGGACTGAGGAACCGTCCATTAAAAATACTCTAGGATCTAGTCTTCTCAGTTTGAGTCTGAATAACTTGGAGCCTCCCCAAAATCATGAGCAACAGAACCTGAATCAATTGGGCTTGCTGCAAATTGAGTTAGAGGAGGTGAAGAAGGAGAATCAGAATTTAAGGTCAATGCTAAATGAGATCTCTGAACACTACGCTGCTCTTCAGAATCAGTTATTGTTGGCGATGCAGCAGAAGAAACTATCTTCATCACCTCGAAATAATGAGGACATGCAGAAGGACAGCCAGCAGAATAACATGGAGAAACCAGCGTTACCCTCCTGCAGGCAGTTCTTAAATACTGGTAAAATCAATAACAGGGTAATATTACAAGAAGCAAAAATCGTAGAAGAGCAAGCATTTGAGGCTTCTTGCAAGAAAGCTAGAGTGTCCGTAAGAGCGCGATCAGAATCATCTTTGATGGGTGATGGGTGTCAATGGAGAAAATATGGACAAAAGATATCAAAGGGCAATCCTTGTCCTCGGGCCTATTATCGCTGCAACATGGGAACTGCATGTCCAGTTCGCAAGCAGGTTCAAAGGTGTGCTGAAGATGAGAGTGTTGTCATCACAACCTATGAGGGGAATCATAATCATTCACTCCCACCAGCAGCCAGGTCCATGGCGTGCACAACATCAGCAGCACTGAAAATGTTCCTTTCTGGCTCAACCACTAGTTCACATGGAAGCACTTATTCTTATTCAAATTCAGACCTCTTCTCTCCACTATGCACTTCTACCTACTATCCATCTGCAGCACCATCATGTCCAACTATAACTTTGGACTTAACCCAAACCTCTAAGAACAACATGAAATTCCCAAGTGCTATTTCTTCAAACCATTTGCAACCTTTTCCACTTTCATTGCATGGTCAACCTCAACAATCTGAGGGAATATTACCTTCAGAGAAAAACCTTGCCTTGGTGGATGTTGTCAGTGCTGCCATAACCAACGATCCTTCTCTTAAGGCAGCATTAGAAGCAGCTGTTTCCTCAATCATTGGAGACTCTCAGAAATCACTGCCAACTTTGTAG 1152 0.4262 MEGKIALKKLLEVQEKAYVNDTDAINWTEEPSIKNTLGSSLLSLSLNNLEPPQNHEQQNLNQLGLLQIELEEVKKENQNLRSMLNEISEHYAALQNQLLLAMQQKKLSSSPRNNEDMQKDSQQNNMEKPALPSCRQFLNTGKINNRVILQEAKIVEEQAFEASCKKARVSVRARSESSLMGDGCQWRKYGQKISKGNPCPRAYYRCNMGTACPVRKQVQRCAEDESVVITTYEGNHNHSLPPAARSMACTTSAALKMFLSGSTTSSHGSTYSYSNSDLFSPLCTSTYYPSAAPSCPTITLDLTQTSKNNMKFPSAISSNHLQPFPLSLHGQPQQSEGILPSEKNLALVDVVSAAITNDPSLKAALEAAVSSIIGDSQKSLPTL* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0871 383 Coils Coil 63 104 - -
Gso13g0871 383 Pfam WRKY DNA -binding domain 182 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso13g0871 383 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 378 IPR044810 GO:0003700
Gso13g0871 383 MobiDBLite consensus disorder prediction 105 129 - -
Gso13g0871 383 ProSiteProfiles WRKY domain profile. 175 241 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso13g0871 383 SUPERFAMILY WRKY DNA-binding domain 173 241 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso13g0871 383 Gene3D WRKY domain 164 242 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso13g0871 383 SMART WRKY_cls 180 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso13g0871 383 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0871 Gso-Chr13 23011026 23014864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0871 152 305 WRKY Transcription Factor Family AT4G04450 60.256 8.75e-62 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso13g0871 WRKY 1.4e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0871 - - gmx:100797109 669.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0871 13 23011026 23014864 Gso17g0348 17 3139026 3143878 GST
Gso13g0871 13 23011026 23014864 Gso1g0372 1 4711945 4718189 PCT
Gso15g1536 15 19209359 19215025 Gso13g0871 13 23011026 23014864 PCT