Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0867 ATGGGAACATTAGAACAAATTGATGCCCCTCAAACCAGGTCATCATCATCTTCATCTTCTTCCATTGATAGCAACAACCACCCTTCTAGGACTAGGACTCCACCACCCTCTTCCCCTTCATCAAGTGCCTGCAGAAACAGAACTGATTTGAGCACTGACCTCAGACTTGGTCTTAGCATCTCTCCTTCTTCTCAATCTGAATTACCCTTCAATTCAACACCAAGGGAGGAAAGTTTTGACTGGCCACCAATTAAGTCTATATTGAGGAGCACCCTTGTGGGGAAACAAAGCCATCTGAGCCAAAGACCCTCCTTGTTTGTCAAAGTGTACATGGAAGGCATCCCCATAGGAAGAAAATTGAATCTGATGGCACATTATAGCTATGATGGACTAGTGAAAACTCTTGGCCATATGTTTAGGACTAACATTCTCTGTCCTAACTCTCAACCACTTAATTCTAGGAATTTTCACGTGCTAACTTATGAGGATCAAGAAGGGGACTGGATGATGGTTGGAGATGTGCCGTGGGAGATGTTCTTGAACAGTGTGAAGAGGCTGAAGATCACAAGAGCTGACAGATGCTAG 585 0.441 MGTLEQIDAPQTRSSSSSSSSIDSNNHPSRTRTPPPSSPSSSACRNRTDLSTDLRLGLSISPSSQSELPFNSTPREESFDWPPIKSILRSTLVGKQSHLSQRPSLFVKVYMEGIPIGRKLNLMAHYSYDGLVKTLGHMFRTNILCPNSQPLNSRNFHVLTYEDQEGDWMMVGDVPWEMFLNSVKRLKITRADRC* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0867 194 ProSiteProfiles PB1 domain profile. 104 193 IPR000270 GO:0005515
Gso13g0867 194 Pfam AUX/IAA family 72 190 IPR033389 -
Gso13g0867 194 MobiDBLite consensus disorder prediction 1 73 - -
Gso13g0867 194 MobiDBLite consensus disorder prediction 1 79 - -
Gso13g0867 194 PANTHER AUXIN-RESPONSIVE PROTEIN IAA31 16 194 - -
Gso13g0867 194 SUPERFAMILY CAD & PB1 domains 97 188 - -
Gso13g0867 194 Gene3D - 98 194 - -
Gso13g0867 194 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 194 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0867 Gso-Chr13 22970660 22972246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0867 108 188 B3 DNA Binding Superfamily AT4G23980 39.506 2.52e-12 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Gso13g0867 AUX_IAA 2.6e-32 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0867 K14484 - gmx:100818083 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0867 13 22970660 22972246 Gso17g0351 17 3184973 3186614 GST