Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0857 ATGGCTGGTGTGAACCCCGAGGCAGGAGGGTGGAAGGCTTATCCTTCTGTTATGGAGACTGCTCTTGATAGTGGTGATGGAAGGAGTCATCATAACATGAGTGATGATGGGTCGGTGATGCATTTCTCTGCTACAAGGTCAGTGGCAGTGCCATCATCTGGACAGAATAAAGTGATTCCTAGTCCAACTCAGTTTAGCATCCTCTATAAGGGGAAAATGTGTATCTATGAAGGAATTCCTGCAGAAAAGGTGCGTGAAATAATGTTGATTGCTTCTGTCTCTGCTAAGTCTGCTGAAATGAAGAGTGGGATCCGATTGACTTCATTCATTCCCAAAAGCCCTTCTTCTTCACAGGGAAACTCTACTAATTTGCCTTCACCCCAATCAGTCAAGAGTTCCATTCGCAGGCTGCAAGATGAATTTCCACTGGCTCGAAGGCAATCACTTCAAAGATTTCTTGAGAAGAGAAGAAACAGGTTGGCTAACAAATCCCCCCATGCCTTAACAAAAAATGTGGTTCACAACCCAGACAAGGGCTTTTCTCCTGACGACACGCCAGATTTTGGTTTGTTGAACTTGAACTTTCAGAGGAGGGATTTCAGCCCCGTGGTGCTGCCTCTTTAA 624 0.4535 MAGVNPEAGGWKAYPSVMETALDSGDGRSHHNMSDDGSVMHFSATRSVAVPSSGQNKVIPSPTQFSILYKGKMCIYEGIPAEKVREIMLIASVSAKSAEMKSGIRLTSFIPKSPSSSQGNSTNLPSPQSVKSSIRRLQDEFPLARRQSLQRFLEKRRNRLANKSPHALTKNVVHNPDKGFSPDDTPDFGLLNLNFQRRDFSPVVLPL* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0857 207 ProSiteProfiles Tify domain profile. 58 93 IPR010399 -
Gso13g0857 207 PANTHER DIVERGENT CCT MOTIF PROTEIN 1 183 - -
Gso13g0857 207 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 1 183 IPR040390 -
Gso13g0857 207 MobiDBLite consensus disorder prediction 109 132 - -
Gso13g0857 207 Pfam Jas motif 142 165 IPR018467 -
Gso13g0857 207 MobiDBLite consensus disorder prediction 160 180 - -
Gso13g0857 207 SMART tify_2 58 93 IPR010399 -
Gso13g0857 207 Pfam tify domain 60 92 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0857 Gso-Chr13 22895638 22898296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0857 62 166 Tify Gene Family AT5G20900 38.596 2.44e-17 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gso13g0857 tify 9.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0857 K13464 - gmx:100306282 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0857 13 22895638 22898296 Gso17g0359 17 3243895 3246561 GST
Gso13g0857 13 22895638 22898296 Gso15g1527 15 18596643 18600572 PCT
Gso13g0857 13 22895638 22898296 Gso9g0651 9 8420673 8424661 PCT
Gso15g1527 15 18596643 18600572 Gso13g0857 13 22895638 22898296 PCT
Gso9g0651 9 8420673 8424661 Gso13g0857 13 22895638 22898296 PCT