Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0856 ATGTCAACAGCAGAAGCTCCTCCTCCGTTCCAAGAAGCAGCGCGATGCGTTGTGTGCAATTGCAGTTTCAACACCTTCAGAAGAAGGCATCACTGTCGATCCTGTGGGAGAACATTGTGCAATGAACATTCATCAGATCAAATGGCTTTACCACAATTTGGCATTTACTCAAATGTCCGAGTATGTGCTGATTGTTTCAACAACTCACGGTCTGGGAAGGATGAACCACAGACTTCTTCAGATGGAGTAAACAGTGTGACAGATACAATTTCTAAATTAGATATCAACACAAATGTTGATTCAAAATCCATACCAACTGCAGAGAATAAGCTTGTGTTGGGCATTAAAGAGTGTAAATGTGGAATGCCACTTTGCATTTGTGAAGCTCCAACCCCTTCCTCTGATGCACTCCCCCAGCAGAAACCCAATCCAGTTATTGCAGCTCCATCAAATCCTAAATCTAAGAAGACAGATACTGTTCCGAAAAATAGAAGCTCCAGTTCAACTAGCAAATTTAGTTCTATGTTTAACGTTGGTCATGTAACTAATGGTACCTCAGACAGGCCCCAGATTGATTATGAAGTTACTGGAGAGGGTTTAAGAGAAGCAATAAAAAATGGTGACATTGCTGCTGTTAAGAAACTTCTTAATGAGGGTGTGGATGCAAATTACAGGGACAAGCAAGGACTGTCTTTATTACATTTGGCTGCAGTCTTCAATCAAACTGATATAGTTTTCATTCTTATGGATTCGGGGGCAAGCCTGGAGTACAAAAATGCACAAGGAGAAACACCTATAGATTGTGCACCCGCTACATTGCAATACAAAATGCGAAAGAAGATGGAAGAAGGTGGAACAGTGGACCAAAGCATTTGA 876 0.4132 MSTAEAPPPFQEAARCVVCNCSFNTFRRRHHCRSCGRTLCNEHSSDQMALPQFGIYSNVRVCADCFNNSRSGKDEPQTSSDGVNSVTDTISKLDINTNVDSKSIPTAENKLVLGIKECKCGMPLCICEAPTPSSDALPQQKPNPVIAAPSNPKSKKTDTVPKNRSSSSTSKFSSMFNVGHVTNGTSDRPQIDYEVTGEGLREAIKNGDIAAVKKLLNEGVDANYRDKQGLSLLHLAAVFNQTDIVFILMDSGASLEYKNAQGETPIDCAPATLQYKMRKKMEEGGTVDQSI* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0856 291 ProSiteProfiles Ankyrin repeat region circular profile. 228 259 - -
Gso13g0856 291 MobiDBLite consensus disorder prediction 136 174 - -
Gso13g0856 291 CDD FYVE_scVPS27p_like 9 66 - -
Gso13g0856 291 SMART fyve_4 2 71 IPR000306 GO:0046872
Gso13g0856 291 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 1 284 - -
Gso13g0856 291 ProSiteProfiles Ankyrin repeat profile. 228 260 IPR002110 GO:0005515
Gso13g0856 291 SMART ANK_2a 195 224 IPR002110 GO:0005515
Gso13g0856 291 SMART ANK_2a 228 257 IPR002110 GO:0005515
Gso13g0856 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 73 IPR013083 -
Gso13g0856 291 ProSiteProfiles Ankyrin repeat profile. 200 227 IPR002110 GO:0005515
Gso13g0856 291 SUPERFAMILY FYVE/PHD zinc finger 10 73 IPR011011 -
Gso13g0856 291 Pfam FYVE zinc finger 11 68 IPR000306 GO:0046872
Gso13g0856 291 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 10 70 IPR017455 -
Gso13g0856 291 SUPERFAMILY Ankyrin repeat 201 270 IPR036770 -
Gso13g0856 291 Gene3D - 193 285 IPR036770 -
Gso13g0856 291 Pfam Ankyrin repeats (3 copies) 203 267 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0856 Gso-Chr13 22884144 22889097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0856 206 266 MAP Kinase Kinase Kinase AT4G18950 40.984 7.79e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0856 - - gmx:100814367 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0856 13 22884144 22889097 Gso17g0361 17 3251871 3255692 GST