Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0855 ATGGGATTCTACGCTGAAGACACTCTCTCAGGCTTGACAATAGGCCAGGCCATATACGAGGTAGCTCTGATGATTGCGGTTCTGAGATGGGTCTTGTGCTTGATCTTCAGAGTGATGAACGACAGAAGAAGAACAGAATCCGATGAGACCCCAGCAGCAGAAGCATGTTGTCAGAAGGAGTACAACAACACTCTTGTGCTGACGACGTTAGGAGAGATTAAGGAGAGGCTGCCGCAGACGGAGGAGACATGTGCGGTGTGCCTGAGCCAGCTGAGCGTGGAGGACGAGGTTAGGGAGCTGATGAACTGCTACCACGTGTTCCACAGAGAGTGCATAGAGAGATGGTTGGAGCACGAGCATGAGAATCACATCCCCACGTGTCCTCTCTGCAGGGCTCCTTTGCTGAGTTCTTGCTGCCACCACAGCTCCACCACTTGTGTCCCTCCTCCTCAGCCTAGTTGGGCTGTGGAGAGACTTCTATATCTTTTTGGGGATGATCTCTTGCCTTGTTAG 513 0.5224 MGFYAEDTLSGLTIGQAIYEVALMIAVLRWVLCLIFRVMNDRRRTESDETPAAEACCQKEYNNTLVLTTLGEIKERLPQTEETCAVCLSQLSVEDEVRELMNCYHVFHRECIERWLEHEHENHIPTCPLCRAPLLSSCCHHSSTTCVPPPQPSWAVERLLYLFGDDLLPC* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0855 170 ProSiteProfiles Zinc finger RING-type profile. 84 131 IPR001841 -
Gso13g0855 170 SMART ring_2 84 130 IPR001841 -
Gso13g0855 170 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 169 - -
Gso13g0855 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 135 IPR013083 -
Gso13g0855 170 SUPERFAMILY RING/U-box 77 137 - -
Gso13g0855 170 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 169 - -
Gso13g0855 170 Pfam Ring finger domain 83 131 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0855 Gso-Chr13 22882086 22882902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0855 1 169 C3H Transcription Factor Family AT3G43430 45.143 8.25e-42 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0855 K16281 - gmx:111138523 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0855 13 22882086 22882902 Gso17g0362 17 3257097 3257984 GST