Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0850 ATGGCTATTCCTTCACTAGTAAACCAGCCTCTAGCATTCAGCTTCTCCTTCCTCCTCTTTCTTGCTCTCTGCACCCCATTGGCTGCTAACAACACCGATTTCGGAGGTTCAGCCTGCCTCAAGGTTTCCCCCACCCACTTCGCCGGCTCAGTCACCGAAGTCATAACTGCTATACGACAAGTCGCTTCCATCCTCTCACGCTTCAGCCCTCCCTTCGCCAACTTCCGCCTCGCCACCGCCCTCGCCGACTGCCTTGACTTGCTCGACCTCTCCTCCGACGTCCTCTCCTGGGCCCTCTCCGCCTCTCAGAACCCCAAAGGGAAGCATAACAGTACGGGGAATCTGAGTTCGGATTTGAGGACATGGCTAAGTGCGGCGCTTGCGCATCCAGAGACGTGCATGGAGGGATTGGAAGGGACAAATAGCATTGTGAAGGGTTTGGTCTCAGCCGGAATCGGCCAAGTGGTGTCGCTGGTGGAGCAGCTTCTTGCGCAGGTGGTGCCCGTACAGGATCAATTTGACGACGCCAGCAGCAAGGGGCAATTTCCTTTGTGGGTTAAGCCCAAGGAAAAGAAGCTGCTGCAATCAATTGGAATGACAGCTGCTGATGTTACTGTAGCGTTAGATGGGAGTGGGAACTATGCTAAGATCATGGACGCGGTGCTTGCGGCACCGGATTACAGCATGAAGCGTTTTGTGATTTTGGTAAAGAAGGGTGTTTATGTTGAGAACGTGGAGATCAAGAGGAAGAAGTGGAATATTATGATGGTTGGAGAGGGGATGGATTCCACCATTATCTCCGGTAACCGGAGTGTCGTCGACGGTTGGACCACATTCCGGTCAGCTACATTCGCTGTGAGTGGCAGAGGATTCATAGCAAGAGACATATCCTTTCAGAACACCGCAGGGCCCGAGAAGCACCAAGCAGTGGCACTAAGATCAGACACTGACCTCTCAGTGTTCTTCCGATGTGGGATTTTCGGTTACCAAGACAGTCTCTACACCCACACAATGCGCCAATTCTTCAGAGAATGCACAATCACTGGAACGGTTGATTACATCTTTGGTGACGCCACTGCAGTGTTCCAAAACTGCTTCCTACGGGTCAAGAAAGGGTTGCCAAACCAAAAGAACACAATCACAGCACACGGTAGAAAAGACCCAAATGAACCAACCGGTTTCTCGTTCCAATTCTGCAACATAACCGCAGATTCTGACCTTGTACCTTGGGTTAGCAGCACTCAAAGTTACCTGGGGAGACCCTGGAAGAGTTACTCACGAACAGTTTTCATGCAATCGTACATGAGTGAGGTGATAAGGGGAGAAGGGTGGTTGGAGTGGAATGGGAACTTTGCATTGGAGACATTGTACTATGGTGAGTACATGAACACCGGGGCAGGTGCTGGACTTGCTAACCGTGTCAAGTGGCCAGGGTACCATCCATTCAATGATTCCAACCAGGCTAGTAACTTCACAGTGGCTCAGTTTATTGAGGGGAATCTATGGTTGCCTTCAACTGGAGTAACGTACACTGCGGGACTCATACTTTAG 1551 0.5106 MAIPSLVNQPLAFSFSFLLFLALCTPLAANNTDFGGSACLKVSPTHFAGSVTEVITAIRQVASILSRFSPPFANFRLATALADCLDLLDLSSDVLSWALSASQNPKGKHNSTGNLSSDLRTWLSAALAHPETCMEGLEGTNSIVKGLVSAGIGQVVSLVEQLLAQVVPVQDQFDDASSKGQFPLWVKPKEKKLLQSIGMTAADVTVALDGSGNYAKIMDAVLAAPDYSMKRFVILVKKGVYVENVEIKRKKWNIMMVGEGMDSTIISGNRSVVDGWTTFRSATFAVSGRGFIARDISFQNTAGPEKHQAVALRSDTDLSVFFRCGIFGYQDSLYTHTMRQFFRECTITGTVDYIFGDATAVFQNCFLRVKKGLPNQKNTITAHGRKDPNEPTGFSFQFCNITADSDLVPWVSSTQSYLGRPWKSYSRTVFMQSYMSEVIRGEGWLEWNGNFALETLYYGEYMNTGAGAGLANRVKWPGYHPFNDSNQASNFTVAQFIEGNLWLPSTGVTYTAGLIL* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0850 516 Pfam Pectinesterase 203 500 IPR000070 GO:0030599|GO:0042545
Gso13g0850 516 SMART PMEI_2 30 165 IPR006501 GO:0004857
Gso13g0850 516 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 160 IPR035513 -
Gso13g0850 516 CDD PMEI-like_4 15 170 - -
Gso13g0850 516 ProSitePatterns Pectinesterase signature 2. 347 356 IPR033131 -
Gso13g0850 516 PANTHER PECTINESTERASE 179 514 - -
Gso13g0850 516 PANTHER PECTINESTERASE 43 173 - -
Gso13g0850 516 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 43 173 - -
Gso13g0850 516 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 179 514 - -
Gso13g0850 516 SUPERFAMILY Pectin lyase-like 199 513 IPR011050 -
Gso13g0850 516 Pfam Plant invertase/pectin methylesterase inhibitor 71 149 IPR006501 GO:0004857
Gso13g0850 516 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 167 IPR035513 -
Gso13g0850 516 Gene3D - 198 514 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0850 Gso-Chr13 22823978 22828350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0850 15 515 Carbohydrate Esterase AT3G43270 61.479 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0850 K01051 - gmx:100812756 997.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0850 13 22823978 22828350 Gso17g0368 17 3316774 3320393 GST
Gso13g0850 13 22823978 22828350 Gso15g1524 15 18412329 18415608 PCT
Gso13g0850 13 22823978 22828350 Gso9g0646 9 8240161 8243274 PCT
Gso15g1524 15 18412329 18415608 Gso13g0850 13 22823978 22828350 PCT
Gso9g0646 9 8240161 8243274 Gso13g0850 13 22823978 22828350 PCT