Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0824 ATGAAGGCTCCATCCAACGGTTACTTGCCTAATTCTGGCGAAGGGGAAAGGAAGACAATCAATTCAGAGTTATGGCACGCTTGTGCTGGACCTTTGGTTTCTTTGCCTCCTGTTGGTAGTCTTGTGGTTTACTTCCCCCAAGGACACAGTGAACAAGTTGCAGCTTCCATGCAAAAGGAGGCTGACTTCATACCAAGTTACCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCGTTGCATGCTGATCCTGAAACTGACGAGGTGTATGCACAGATGACCCTTCAACCTGTAAACAAATATGAGAAAGAAGCAATACTGGCATCAGACATGGGTCTCAAACAAAACCGTCAACCCACTGAGTTCTTTTGCAAAACTCTTACAGCTAGTGACACTAGCACTCATGGTGGATTTTCTGTGCCACGTAGAGCAGCTGAGAAAATATTCCCACCTTTGGATTATTCAATGCAACCTCCAGCTCAGGAGCTTGTTGCCAAGGATTTGCACGACAATACATGGGCATTTAGACATATTTATCGGGGACAACCAAAGAGGCATCTATTGACTACTGGATGGAGTGTATTTGTCAGCACTAAAAGACTGTTTGCCGGAGATTCTGTTCTTTTTATCAGAGATGAAAAACAGCATCTTCTTTTAGGTATAAGGCGTGCTAATAGACAGCAACCAGCACTCTCTTCGTCAGTGATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCTGCTCATGCTGCTGCAAATAACAGCCCATTCACTATATTTTACAATCCAAGGGCTAGCCCCTCTGAATTTGTTGTTCCATTAGCCAAGTATAACAAAGTCACGTACACCCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACTGAGGAGTCTGGGGTACGCAGATATATGGGGACAATCACTGGGATCAATGACTTGGATCCTGTCCGATGGAAAAGCTCACAGTGGCGCAATATTCAGGTTGGATGGGATGAATCAACAGCTGGTGAACGCCCCAGTAGAGTTTCAATCTGGGAAATTGAACCAGTGGTGACTCCTTTCTACATTTGTCCACCTCCATTTTTTAGGCCAAAGTTCCCCCGGCAACCAGGAATGCCAGATGATGAGTCAGATATGGAAAATGCTTTCAAAAGAGCAGTGCCCTGGCTTGGAGATGACTTTGGCATGAAGGATGCCTCAAGTTCAATATTTCCTGGTTTCAGTTTAGTGCAATGGATGAGCATGCAGCAGAATAACCAGCTCACTGCTGCTCAATCAGGATGTTTCCCATCAATGCTTCCATTTAATACCCTTCAGGGTAACCTTAGCACTGATGACCCTTCCAAGTTATTGAGCTTTCAAGCTCCTGTCCTCTCTACCCCAAGTCTTCAATTAAACAAACCTAATCTACCAAATCAAATCAACCAGTTGCAACAGTCTCCAGTGTCATGGCCTCAGCAGCAACAGTTGCAGCAACAACAACAGCTGCAGCAGCAGCAACAGCAACAACAACAGCAGCAGCAGCAGCTACAGCAGCAACAACAGCAGCAGCTACAGTCATTGTTGCAAGTACCAATGAACCATCTCCAGCAGCAGAGGGAACAACAACTGCCTGAACCACAAAATCTGCCATTGTGGCAGCAACTGCCTCAGCAGCTAGGACAGCAGCCTCAGAAACAACAGTCAAGTCAACATGCTACTATTATGAATAATGGGGTAGTCGCCTCTAACCAGATTACAAATCAGTTTTCACAACAACCAATGGCATATGGTCAACTTCAGCAACAACAGTTACTCTCAGGAGGTATCCAGTCAGCTACTAAGAATACATTGCCATTGACATCCTTACCACAAGACTCACAATTTCAGCAACAGATAGATCAGCAAGCTAGCCTCTTACAGAGGCAGCAACAACAACAGCAGACACAATTGCAACAATCTCCATTGCAGTTGTTGCAGCAAAACCTGCCACAGAGAGCACCACAACAACCCCCAGCCACTCAAATGTTACAGCAAAATCCCTCTGAGCAACAACTCCACCTGCAGTTGCTACAGAAATTGCAGCAGCAGCAGCAGCATCAACAACTACTTTCCACGTCTACCCCACTTTTGCTGTCTCAGCTTCTACAACAACAAAATACTCACCAACAAAACCAGCAATTACCGCAGCCCCTGCCGCCTATATCTCAGCATCAACCTCAACAACTAGGCAATAACGCATTCTCAACAGAGAAGCTTCTCAACAGCAACAACTTATCTTCATCTCTTATGCAATCACAGAAGCTTTCAATGAACCATCCCCAGAATACACAGAAATCACTTACCATCACTAGAGCTCCCTCTACACTAACTGAGGGAGATGCCCCATCATGCTCAACCTCTCCATCTACTAATAACTGCCAGGTGACTCCCCCAAACCTCCTGAAAAGAAATCAGCAATTACCAGCCACATTAAGGGGAAGTTTGATAGTTGAGCCCACTAGTAATCTGATACAGGAGCTTCACAGTAAGCCTGGCACGCAGATCAAACAGGAGTTTCTCAATGTAAAAGGACCTGACCAGTTGAAGTATAAAGGGACAATTACTGATCAACTAGAAGCTTCTTCTGGAACATCTTACTGTCTTGATCCTCCTGGTAATGTCCAGCAGAACTTGCCACTTTCCAACTTCTGCATGGAAGGGGATGTCCAATCACACCCAAGAAATAGTTTACCATTTGACTCCAATCTGGATGGTCTAACCCCTGATACTATGCTTCTAACGGGGTATGACTCTCAAAAAGATCTTCAAAATTTGTTGTCTAACTATGGTGGTGCTCCAAGAGAGATTGAAACTGAGCTGTCAACTGCTGACATCAGCTCACAGTCGTTTGGAGTGCCAAACATGCCTTTCAAGCCAGGTTGCTCAAGTGATGTTGGCATCAATGATACTGGGGTTTTAAATAATAATAATGGCTTGCGGGCTAACCAAACTCCACGAATGCGAACATATACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGTATTGATGTTACCCGTTACAAGGGATATGATGAACTCCGGCATGATTTGGCTAGAATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCTAAGGACTGATTGGAAATTAGTATATGTGGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGATGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCAGAAGTGCAGCAAATGAGCTTGGATGGGGATTTAGGTGGTAATGTTCCAATCCCCAATCAAGCTTACAGTGGGACAGACAGTGGCAATGCATGGAGGGGACAGTATGAAGATAACTCAGCTGCCTCCTTTAATAGGTAA 3393 0.4453 MKAPSNGYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQHLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKVTYTQVSLGMRFRMMFETEESGVRRYMGTITGINDLDPVRWKSSQWRNIQVGWDESTAGERPSRVSIWEIEPVVTPFYICPPPFFRPKFPRQPGMPDDESDMENAFKRAVPWLGDDFGMKDASSSIFPGFSLVQWMSMQQNNQLTAAQSGCFPSMLPFNTLQGNLSTDDPSKLLSFQAPVLSTPSLQLNKPNLPNQINQLQQSPVSWPQQQQLQQQQQLQQQQQQQQQQQQQLQQQQQQQLQSLLQVPMNHLQQQREQQLPEPQNLPLWQQLPQQLGQQPQKQQSSQHATIMNNGVVASNQITNQFSQQPMAYGQLQQQQLLSGGIQSATKNTLPLTSLPQDSQFQQQIDQQASLLQRQQQQQQTQLQQSPLQLLQQNLPQRAPQQPPATQMLQQNPSEQQLHLQLLQKLQQQQQHQQLLSTSTPLLLSQLLQQQNTHQQNQQLPQPLPPISQHQPQQLGNNAFSTEKLLNSNNLSSSLMQSQKLSMNHPQNTQKSLTITRAPSTLTEGDAPSCSTSPSTNNCQVTPPNLLKRNQQLPATLRGSLIVEPTSNLIQELHSKPGTQIKQEFLNVKGPDQLKYKGTITDQLEASSGTSYCLDPPGNVQQNLPLSNFCMEGDVQSHPRNSLPFDSNLDGLTPDTMLLTGYDSQKDLQNLLSNYGGAPREIETELSTADISSQSFGVPNMPFKPGCSSDVGINDTGVLNNNNGLRANQTPRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPLRTDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSSAEVQQMSLDGDLGGNVPIPNQAYSGTDSGNAWRGQYEDNSAASFNR* 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0824 1130 Pfam AUX/IAA family 998 1088 IPR033389 -
Gso13g0824 1130 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Gso13g0824 1130 SUPERFAMILY CAD & PB1 domains 1015 1080 - -
Gso13g0824 1130 CDD B3_DNA 125 226 IPR003340 GO:0003677
Gso13g0824 1130 Gene3D - 998 1091 - -
Gso13g0824 1130 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Gso13g0824 1130 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1118 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso13g0824 1130 PANTHER AUXIN RESPONSE FACTOR 19 1 1118 - -
Gso13g0824 1130 Gene3D - 289 360 - -
Gso13g0824 1130 MobiDBLite consensus disorder prediction 1103 1130 - -
Gso13g0824 1130 Coils Coil 493 523 - -
Gso13g0824 1130 SMART B3_2 126 228 IPR003340 GO:0003677
Gso13g0824 1130 MobiDBLite consensus disorder prediction 664 684 - -
Gso13g0824 1130 ProSiteProfiles PB1 domain profile. 1002 1095 IPR000270 GO:0005515
Gso13g0824 1130 MobiDBLite consensus disorder prediction 721 742 - -
Gso13g0824 1130 MobiDBLite consensus disorder prediction 788 811 - -
Gso13g0824 1130 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Gso13g0824 1130 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso13g0824 1130 Gene3D - 123 227 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0824 Gso-Chr13 22536567 22544034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0824 1 487 B3 DNA Binding Superfamily AT1G19220 82.752 0.0 839
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso13g0824 AUX_IAA 6.1e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0824 - K14486 gmx:100805456 1832.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0824 13 22536567 22544034 Gso17g0388 17 3565215 3573241 GST
Gso13g0824 13 22536567 22544034 Gso15g1492 15 17533345 17541419 PCT
Gso13g0824 13 22536567 22544034 Gso9g0610 9 7356063 7364079 PCT
Gso15g1492 15 17533345 17541419 Gso13g0824 13 22536567 22544034 PCT
Gso9g0610 9 7356063 7364079 Gso13g0824 13 22536567 22544034 PCT