Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso13g0824 | ATGAAGGCTCCATCCAACGGTTACTTGCCTAATTCTGGCGAAGGGGAAAGGAAGACAATCAATTCAGAGTTATGGCACGCTTGTGCTGGACCTTTGGTTTCTTTGCCTCCTGTTGGTAGTCTTGTGGTTTACTTCCCCCAAGGACACAGTGAACAAGTTGCAGCTTCCATGCAAAAGGAGGCTGACTTCATACCAAGTTACCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCGTTGCATGCTGATCCTGAAACTGACGAGGTGTATGCACAGATGACCCTTCAACCTGTAAACAAATATGAGAAAGAAGCAATACTGGCATCAGACATGGGTCTCAAACAAAACCGTCAACCCACTGAGTTCTTTTGCAAAACTCTTACAGCTAGTGACACTAGCACTCATGGTGGATTTTCTGTGCCACGTAGAGCAGCTGAGAAAATATTCCCACCTTTGGATTATTCAATGCAACCTCCAGCTCAGGAGCTTGTTGCCAAGGATTTGCACGACAATACATGGGCATTTAGACATATTTATCGGGGACAACCAAAGAGGCATCTATTGACTACTGGATGGAGTGTATTTGTCAGCACTAAAAGACTGTTTGCCGGAGATTCTGTTCTTTTTATCAGAGATGAAAAACAGCATCTTCTTTTAGGTATAAGGCGTGCTAATAGACAGCAACCAGCACTCTCTTCGTCAGTGATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCTGCTCATGCTGCTGCAAATAACAGCCCATTCACTATATTTTACAATCCAAGGGCTAGCCCCTCTGAATTTGTTGTTCCATTAGCCAAGTATAACAAAGTCACGTACACCCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACTGAGGAGTCTGGGGTACGCAGATATATGGGGACAATCACTGGGATCAATGACTTGGATCCTGTCCGATGGAAAAGCTCACAGTGGCGCAATATTCAGGTTGGATGGGATGAATCAACAGCTGGTGAACGCCCCAGTAGAGTTTCAATCTGGGAAATTGAACCAGTGGTGACTCCTTTCTACATTTGTCCACCTCCATTTTTTAGGCCAAAGTTCCCCCGGCAACCAGGAATGCCAGATGATGAGTCAGATATGGAAAATGCTTTCAAAAGAGCAGTGCCCTGGCTTGGAGATGACTTTGGCATGAAGGATGCCTCAAGTTCAATATTTCCTGGTTTCAGTTTAGTGCAATGGATGAGCATGCAGCAGAATAACCAGCTCACTGCTGCTCAATCAGGATGTTTCCCATCAATGCTTCCATTTAATACCCTTCAGGGTAACCTTAGCACTGATGACCCTTCCAAGTTATTGAGCTTTCAAGCTCCTGTCCTCTCTACCCCAAGTCTTCAATTAAACAAACCTAATCTACCAAATCAAATCAACCAGTTGCAACAGTCTCCAGTGTCATGGCCTCAGCAGCAACAGTTGCAGCAACAACAACAGCTGCAGCAGCAGCAACAGCAACAACAACAGCAGCAGCAGCAGCTACAGCAGCAACAACAGCAGCAGCTACAGTCATTGTTGCAAGTACCAATGAACCATCTCCAGCAGCAGAGGGAACAACAACTGCCTGAACCACAAAATCTGCCATTGTGGCAGCAACTGCCTCAGCAGCTAGGACAGCAGCCTCAGAAACAACAGTCAAGTCAACATGCTACTATTATGAATAATGGGGTAGTCGCCTCTAACCAGATTACAAATCAGTTTTCACAACAACCAATGGCATATGGTCAACTTCAGCAACAACAGTTACTCTCAGGAGGTATCCAGTCAGCTACTAAGAATACATTGCCATTGACATCCTTACCACAAGACTCACAATTTCAGCAACAGATAGATCAGCAAGCTAGCCTCTTACAGAGGCAGCAACAACAACAGCAGACACAATTGCAACAATCTCCATTGCAGTTGTTGCAGCAAAACCTGCCACAGAGAGCACCACAACAACCCCCAGCCACTCAAATGTTACAGCAAAATCCCTCTGAGCAACAACTCCACCTGCAGTTGCTACAGAAATTGCAGCAGCAGCAGCAGCATCAACAACTACTTTCCACGTCTACCCCACTTTTGCTGTCTCAGCTTCTACAACAACAAAATACTCACCAACAAAACCAGCAATTACCGCAGCCCCTGCCGCCTATATCTCAGCATCAACCTCAACAACTAGGCAATAACGCATTCTCAACAGAGAAGCTTCTCAACAGCAACAACTTATCTTCATCTCTTATGCAATCACAGAAGCTTTCAATGAACCATCCCCAGAATACACAGAAATCACTTACCATCACTAGAGCTCCCTCTACACTAACTGAGGGAGATGCCCCATCATGCTCAACCTCTCCATCTACTAATAACTGCCAGGTGACTCCCCCAAACCTCCTGAAAAGAAATCAGCAATTACCAGCCACATTAAGGGGAAGTTTGATAGTTGAGCCCACTAGTAATCTGATACAGGAGCTTCACAGTAAGCCTGGCACGCAGATCAAACAGGAGTTTCTCAATGTAAAAGGACCTGACCAGTTGAAGTATAAAGGGACAATTACTGATCAACTAGAAGCTTCTTCTGGAACATCTTACTGTCTTGATCCTCCTGGTAATGTCCAGCAGAACTTGCCACTTTCCAACTTCTGCATGGAAGGGGATGTCCAATCACACCCAAGAAATAGTTTACCATTTGACTCCAATCTGGATGGTCTAACCCCTGATACTATGCTTCTAACGGGGTATGACTCTCAAAAAGATCTTCAAAATTTGTTGTCTAACTATGGTGGTGCTCCAAGAGAGATTGAAACTGAGCTGTCAACTGCTGACATCAGCTCACAGTCGTTTGGAGTGCCAAACATGCCTTTCAAGCCAGGTTGCTCAAGTGATGTTGGCATCAATGATACTGGGGTTTTAAATAATAATAATGGCTTGCGGGCTAACCAAACTCCACGAATGCGAACATATACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGTATTGATGTTACCCGTTACAAGGGATATGATGAACTCCGGCATGATTTGGCTAGAATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCTAAGGACTGATTGGAAATTAGTATATGTGGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGATGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCAGAAGTGCAGCAAATGAGCTTGGATGGGGATTTAGGTGGTAATGTTCCAATCCCCAATCAAGCTTACAGTGGGACAGACAGTGGCAATGCATGGAGGGGACAGTATGAAGATAACTCAGCTGCCTCCTTTAATAGGTAA | 3393 | 0.4453 | MKAPSNGYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQHLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKVTYTQVSLGMRFRMMFETEESGVRRYMGTITGINDLDPVRWKSSQWRNIQVGWDESTAGERPSRVSIWEIEPVVTPFYICPPPFFRPKFPRQPGMPDDESDMENAFKRAVPWLGDDFGMKDASSSIFPGFSLVQWMSMQQNNQLTAAQSGCFPSMLPFNTLQGNLSTDDPSKLLSFQAPVLSTPSLQLNKPNLPNQINQLQQSPVSWPQQQQLQQQQQLQQQQQQQQQQQQQLQQQQQQQLQSLLQVPMNHLQQQREQQLPEPQNLPLWQQLPQQLGQQPQKQQSSQHATIMNNGVVASNQITNQFSQQPMAYGQLQQQQLLSGGIQSATKNTLPLTSLPQDSQFQQQIDQQASLLQRQQQQQQTQLQQSPLQLLQQNLPQRAPQQPPATQMLQQNPSEQQLHLQLLQKLQQQQQHQQLLSTSTPLLLSQLLQQQNTHQQNQQLPQPLPPISQHQPQQLGNNAFSTEKLLNSNNLSSSLMQSQKLSMNHPQNTQKSLTITRAPSTLTEGDAPSCSTSPSTNNCQVTPPNLLKRNQQLPATLRGSLIVEPTSNLIQELHSKPGTQIKQEFLNVKGPDQLKYKGTITDQLEASSGTSYCLDPPGNVQQNLPLSNFCMEGDVQSHPRNSLPFDSNLDGLTPDTMLLTGYDSQKDLQNLLSNYGGAPREIETELSTADISSQSFGVPNMPFKPGCSSDVGINDTGVLNNNNGLRANQTPRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPLRTDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSSAEVQQMSLDGDLGGNVPIPNQAYSGTDSGNAWRGQYEDNSAASFNR* | 1131 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso13g0824 | 1130 | Pfam | AUX/IAA family | 998 | 1088 | IPR033389 | - | |
| Gso13g0824 | 1130 | Pfam | B3 DNA binding domain | 126 | 227 | IPR003340 | GO:0003677 | |
| Gso13g0824 | 1130 | SUPERFAMILY | CAD & PB1 domains | 1015 | 1080 | - | - | |
| Gso13g0824 | 1130 | CDD | B3_DNA | 125 | 226 | IPR003340 | GO:0003677 | |
| Gso13g0824 | 1130 | Gene3D | - | 998 | 1091 | - | - | |
| Gso13g0824 | 1130 | SUPERFAMILY | DNA-binding pseudobarrel domain | 116 | 255 | IPR015300 | - | |
| Gso13g0824 | 1130 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 1 | 1118 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
| Gso13g0824 | 1130 | PANTHER | AUXIN RESPONSE FACTOR 19 | 1 | 1118 | - | - | |
| Gso13g0824 | 1130 | Gene3D | - | 289 | 360 | - | - | |
| Gso13g0824 | 1130 | MobiDBLite | consensus disorder prediction | 1103 | 1130 | - | - |
Showing 1 to 10 of 19 entries
Duplication type information
Functional genes information
Transcription factors information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso13g0824 | - | K14486 | gmx:100805456 | 1832.38 |
Showing 1 to 1 of 1 entries
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gso13g0824 | 13 | 22536567 | 22544034 | Gso17g0388 | 17 | 3565215 | 3573241 | GST | |
| Gso13g0824 | 13 | 22536567 | 22544034 | Gso15g1492 | 15 | 17533345 | 17541419 | PCT | |
| Gso13g0824 | 13 | 22536567 | 22544034 | Gso9g0610 | 9 | 7356063 | 7364079 | PCT | |
| Gso15g1492 | 15 | 17533345 | 17541419 | Gso13g0824 | 13 | 22536567 | 22544034 | PCT | |
| Gso9g0610 | 9 | 7356063 | 7364079 | Gso13g0824 | 13 | 22536567 | 22544034 | PCT |
Showing 1 to 5 of 5 entries