Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0822 ATGATGGTGAAGCCGAGTAGCGAAAAGCCAGAGGAGCATAGGGATTCCAAGTACTACAAAGGGGTCCGAAAGAGAAAATGGGGCAAATGGGTATCCGAAATAAGACTACCCAACAGCCGTCAGAGGATTTGGTTGGGATCCTACGACACCCCCGAGAAGGCCGCGCGTGCCTTCGACGCCGCAATGTTCTGCTTACGTGGCCGCAACGCCAAGTTCAATTTCCCCGACAACCCTCCCGACATCGCCGGCGGGGAATCCATGACGCCGTCACAGATTCAGGTCGCCGCCGCACAATTCGCCAACTCTGGGCCCCACGAGGGACATTCGGGTCGACCCGAACATTCTCCCATGCAATCTCTATCGCCTTCTGTTTCAGAAGGGACCGTTCTAACGGACAGTGACGTCACCACACTTAACGGTTCGCTAACGGATTTGTTCACTCCCGTTGGGTCGAGTGGTTACGCATCCGATTACGGGATTTTCCCCGGTGTTGATGATTTCAGTGGCGGTTTTTATGTGCCGGAAATGCTGAACTTTAATTATGGAGAAGAAAACGGGGAAGGGTTCATAGTTGATGAGTCTTTCTTGTGGAATTTTTGA 600 0.525 MMVKPSSEKPEEHRDSKYYKGVRKRKWGKWVSEIRLPNSRQRIWLGSYDTPEKAARAFDAAMFCLRGRNAKFNFPDNPPDIAGGESMTPSQIQVAAAQFANSGPHEGHSGRPEHSPMQSLSPSVSEGTVLTDSDVTTLNGSLTDLFTPVGSSGYASDYGIFPGVDDFSGGFYVPEMLNFNYGEENGEGFIVDESFLWNF* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0822 199 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Gso13g0822 199 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Gso13g0822 199 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Gso13g0822 199 MobiDBLite consensus disorder prediction 101 128 - -
Gso13g0822 199 MobiDBLite consensus disorder prediction 114 128 - -
Gso13g0822 199 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 199 - -
Gso13g0822 199 Pfam AP2 domain 19 67 IPR001471 GO:0003700|GO:0006355
Gso13g0822 199 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF017-LIKE 8 199 - -
Gso13g0822 199 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Gso13g0822 199 Gene3D AP2/ERF domain 17 76 IPR036955 GO:0003700|GO:0006355
Gso13g0822 199 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Gso13g0822 199 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0822 Gso-Chr13 22527928 22528909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0822 19 199 AP2-EREBP Transcription Factor Family AT1G19210 50.265 9.64e-58 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso13g0822 AP2 3.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0822 - - gmx:100804384 415.231