Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0819 ATGCAACCACAGAGGTTAAGGCAGCATGCCATGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGTTTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCTTTTTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAGTCATCCTATGGCTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCCATTGTAACTCTCAATGGGAGGAATATTTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACCTCAGGTCACTTTAATATTTTTGTCGGTGACCTTAGTCCTGAGGTTACAGATGCGACATTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTCTGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGGATGCCCAAAGTGCTATAAATGATTTGACTGGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGGCCAGTGCCAGTGATGAAAAGCAGAGTTCGGATTCAAAAATTGTCGTGGAGTTGACCAATGGATCATCCGAAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCGGAGGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAATTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGATACAGTACCCATGCTGAAGCAGCTCTTGCTATACAGATGGGTAATGCCCGAATTCTATTTGGCAAACCTATCAAGTGTTCATGGGGTAGCAAGCCTACTCCTCTGGGAACTGCCTCTACTCCTCTTCTGCCACCTTCTGCAAATGTGCCGGGCTTTTCTCTGGCTGGTCTTGCAGCATATGAACGTCAAATGGCTTTGAGTAAAATGGGTGGTGCACACACCCTTATGCATCAACAAGGTCAACATGCCCTAAAGCATGAAGACATGGGGATGGGTGCTACTGGGACTGGTTTCGATGCAAGGTTCCAGAATGTTGCAACCACCCAACACCTAGTGTACTATCAGTAA 1233 0.4566 MQPQRLRQHAMLQPSLYHHPALLTPPQIEPILSGNLPPGFDSSSCRSVYVGNIHPQVTDSLLQELFSTAGALEGCKLIRKEKSSYGFVDYFDRSSAAFAIVTLNGRNIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGASASDEKQSSDSKIVVELTNGSSEEGQETTNDDTPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLNAGIIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILFGKPIKCSWGSKPTPLGTASTPLLPPSANVPGFSLAGLAAYERQMALSKMGGAHTLMHQQGQHALKHEDMGMGATGTGFDARFQNVATTQHLVYYQ* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0819 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Gso13g0819 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Gso13g0819 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 320 IPR000504 GO:0003723
Gso13g0819 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Gso13g0819 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 326 IPR000504 GO:0003723
Gso13g0819 410 SMART rrm1_1 132 205 IPR000504 GO:0003723
Gso13g0819 410 SMART rrm1_1 47 116 IPR000504 GO:0003723
Gso13g0819 410 SMART rrm1_1 253 322 IPR000504 GO:0003723
Gso13g0819 410 CDD RRM1_TIA1_like 48 118 - -
Gso13g0819 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Gso13g0819 410 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 2 405 - -
Gso13g0819 410 PANTHER NUCLEOLYSIN TIAR-LIKE PROTEIN 2 405 - -
Gso13g0819 410 Gene3D - 126 225 IPR012677 -
Gso13g0819 410 SUPERFAMILY RNA-binding domain, RBD 35 124 IPR035979 GO:0003676
Gso13g0819 410 MobiDBLite consensus disorder prediction 229 251 - -
Gso13g0819 410 SUPERFAMILY RNA-binding domain, RBD 243 329 IPR035979 GO:0003676
Gso13g0819 410 Gene3D - 229 330 IPR012677 -
Gso13g0819 410 Gene3D - 39 125 IPR012677 -
Gso13g0819 410 CDD RRM3_TIA1_like 252 326 - -
Gso13g0819 410 SUPERFAMILY RNA-binding domain, RBD 124 215 IPR035979 GO:0003676
Gso13g0819 410 CDD RRM2_PUB1 132 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0819 Gso-Chr13 22498535 22502807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0819 42 320 Eukaryotic Initiation Factors Gene Family AT3G16380 26.351 1.01e-19 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0819 K13201 - gmx:100803322 832.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0819 13 22498535 22502807 Gso17g0393 17 3608469 3613784 GST