Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso13g0819 | ATGCAACCACAGAGGTTAAGGCAGCATGCCATGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGTTTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCTTTTTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAGTCATCCTATGGCTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCCATTGTAACTCTCAATGGGAGGAATATTTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACCTCAGGTCACTTTAATATTTTTGTCGGTGACCTTAGTCCTGAGGTTACAGATGCGACATTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTCTGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGGATGCCCAAAGTGCTATAAATGATTTGACTGGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGGCCAGTGCCAGTGATGAAAAGCAGAGTTCGGATTCAAAAATTGTCGTGGAGTTGACCAATGGATCATCCGAAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCGGAGGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAATTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGATACAGTACCCATGCTGAAGCAGCTCTTGCTATACAGATGGGTAATGCCCGAATTCTATTTGGCAAACCTATCAAGTGTTCATGGGGTAGCAAGCCTACTCCTCTGGGAACTGCCTCTACTCCTCTTCTGCCACCTTCTGCAAATGTGCCGGGCTTTTCTCTGGCTGGTCTTGCAGCATATGAACGTCAAATGGCTTTGAGTAAAATGGGTGGTGCACACACCCTTATGCATCAACAAGGTCAACATGCCCTAAAGCATGAAGACATGGGGATGGGTGCTACTGGGACTGGTTTCGATGCAAGGTTCCAGAATGTTGCAACCACCCAACACCTAGTGTACTATCAGTAA | 1233 | 0.4566 | MQPQRLRQHAMLQPSLYHHPALLTPPQIEPILSGNLPPGFDSSSCRSVYVGNIHPQVTDSLLQELFSTAGALEGCKLIRKEKSSYGFVDYFDRSSAAFAIVTLNGRNIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGASASDEKQSSDSKIVVELTNGSSEEGQETTNDDTPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLNAGIIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILFGKPIKCSWGSKPTPLGTASTPLLPPSANVPGFSLAGLAAYERQMALSKMGGAHTLMHQQGQHALKHEDMGMGATGTGFDARFQNVATTQHLVYYQ* | 411 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso13g0819 | 410 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 46 | 120 | IPR000504 | GO:0003723 | |
Gso13g0819 | 410 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 48 | 114 | IPR000504 | GO:0003723 | |
Gso13g0819 | 410 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 254 | 320 | IPR000504 | GO:0003723 | |
Gso13g0819 | 410 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 133 | 203 | IPR000504 | GO:0003723 | |
Gso13g0819 | 410 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 252 | 326 | IPR000504 | GO:0003723 | |
Gso13g0819 | 410 | SMART | rrm1_1 | 132 | 205 | IPR000504 | GO:0003723 | |
Gso13g0819 | 410 | SMART | rrm1_1 | 47 | 116 | IPR000504 | GO:0003723 | |
Gso13g0819 | 410 | SMART | rrm1_1 | 253 | 322 | IPR000504 | GO:0003723 | |
Gso13g0819 | 410 | CDD | RRM1_TIA1_like | 48 | 118 | - | - | |
Gso13g0819 | 410 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 131 | 209 | IPR000504 | GO:0003723 | |
Gso13g0819 | 410 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 2 | 405 | - | - | |
Gso13g0819 | 410 | PANTHER | NUCLEOLYSIN TIAR-LIKE PROTEIN | 2 | 405 | - | - | |
Gso13g0819 | 410 | Gene3D | - | 126 | 225 | IPR012677 | - | |
Gso13g0819 | 410 | SUPERFAMILY | RNA-binding domain, RBD | 35 | 124 | IPR035979 | GO:0003676 | |
Gso13g0819 | 410 | MobiDBLite | consensus disorder prediction | 229 | 251 | - | - | |
Gso13g0819 | 410 | SUPERFAMILY | RNA-binding domain, RBD | 243 | 329 | IPR035979 | GO:0003676 | |
Gso13g0819 | 410 | Gene3D | - | 229 | 330 | IPR012677 | - | |
Gso13g0819 | 410 | Gene3D | - | 39 | 125 | IPR012677 | - | |
Gso13g0819 | 410 | CDD | RRM3_TIA1_like | 252 | 326 | - | - | |
Gso13g0819 | 410 | SUPERFAMILY | RNA-binding domain, RBD | 124 | 215 | IPR035979 | GO:0003676 | |
Gso13g0819 | 410 | CDD | RRM2_PUB1 | 132 | 206 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso13g0819 | Gso-Chr13 | 22498535 | 22502807 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso13g0819 | 42 | 320 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 26.351 | 1.01e-19 | 89.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso13g0819 | K13201 | - | gmx:100803322 | 832.402 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso13g0819 | 13 | 22498535 | 22502807 | Gso17g0393 | 17 | 3608469 | 3613784 | GST |