Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0818 ATGTCCAGCTCATCGGAATATTTGGTATTTTCCGGCCACCACCCGGCGAACTCTCCGGCGGAAAAGTCCACTTTCTCTCAGACTTGTAGTCTATTGAGCCAATACATCAAGGAAAAGGGTACCTTCGGAGACCTTACCCTCGGGATGACTTGCACTGCCGAAACAAACGGTTCCCCTGAGACATCGTGTCACTCTGCAACAACCATGGAGTTGTTTCCCACGATCATCACGCAACGGAACCCAACTACTGTGGATTTCCTATCTCCCCAGACTGCTTATCCTCACCACTCAGAGGTTCCAACCATGGTTAAATCAAGTGCTTTTAAGTCTATGGAGAAGGAGCCTAAAGCTGCTCAGTTGACGATCTTTTATGCTGGGCAAGTTGTTGTGTTTGATGATTTTCCTGCTGAAAAATTGGAGGAGATAACGTCATTAGCCGGCAAGGGAATATCCCAAAGCCAAAACACCTCTGCTTATGCTCACACTCATAACCAGCAAGTGAATCATCCTTCCTTTGTTCCTAATATCTCCCCTCAAGCACCGTCCAGACCACTTGTTTGTGATCTGCCAATTGCTAGGAAAGCTTCACTTCATCGGTTCCTTTCTAAGAGAAAAGATAGAATTGCTGCCAAAGCACCCTATCAAATAAACAATCCCAACTCTGCTTCAAGTAAGCCGGCTGAATCCATGTCATGGCTTGGATTAGGTGCTCAATCAACACAAGTCTAA 729 0.4609 MSSSSEYLVFSGHHPANSPAEKSTFSQTCSLLSQYIKEKGTFGDLTLGMTCTAETNGSPETSCHSATTMELFPTIITQRNPTTVDFLSPQTAYPHHSEVPTMVKSSAFKSMEKEPKAAQLTIFYAGQVVVFDDFPAEKLEEITSLAGKGISQSQNTSAYAHTHNQQVNHPSFVPNISPQAPSRPLVCDLPIARKASLHRFLSKRKDRIAAKAPYQINNPNSASSKPAESMSWLGLGAQSTQV* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0818 242 MobiDBLite consensus disorder prediction 211 242 - -
Gso13g0818 242 ProSiteProfiles Tify domain profile. 113 148 IPR010399 -
Gso13g0818 242 PANTHER PROTEIN TIFY 10A 20 236 - -
Gso13g0818 242 SMART tify_2 113 148 IPR010399 -
Gso13g0818 242 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 20 236 IPR040390 -
Gso13g0818 242 Pfam Jas motif 190 215 IPR018467 -
Gso13g0818 242 MobiDBLite consensus disorder prediction 214 242 - -
Gso13g0818 242 Pfam tify domain 114 147 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0818 Gso-Chr13 22492284 22494651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0818 1 238 Tify Gene Family AT1G19180 42.412 1.50e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gso13g0818 tify 2.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0818 K13464 - gmx:100802800 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0818 13 22492284 22494651 Gso17g0394 17 3619996 3622297 GST
Gso13g0818 13 22492284 22494651 Gso15g1487 15 17346605 17349223 PCT
Gso13g0818 13 22492284 22494651 Gso9g0604 9 7245028 7247729 PCT
Gso15g1487 15 17346605 17349223 Gso13g0818 13 22492284 22494651 PCT
Gso9g0604 9 7245028 7247729 Gso13g0818 13 22492284 22494651 PCT